Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01071 ATGGCGACATCGACATCAATCTCAAAGACACTCATTCCCTTCTCCAAAACGCAGGAAGCTAGCCTCCGACTACCCCACCGGAAGTTCCCAAGACCAAACACGCGAACCCACATGCCAATAAAACTCGCGGCACGTGACAACTCCTCAGCCTCCCTCGTGAACTACAAGCCCAAGTTAGAGGAGCAGCTAAAGCGACTCCCGGAAGCGTGGCGCCAAATCCAGGGAGAGAGCGACTGGGCCGGCCTTCTGGAGCCCATGGACCCTCTCCTCCGGGCGGAATTAATCCGCTATGGAGAGATGGCCCAGGCCTGCTACGACGCCTTCGACTTCGACCCCTTCTCAAAGTACTGCGGCAGCTGCAGGTTCACCCCGCGCGCTTTTTTCCCCTCCCTCCACATGTCCCACATCGGCTACCACGTCACCCGCTACCTCTACGCCACTGCCAATATAAACCTCCCCAACTTCTTCAACCACTCACGCTGGTCCAAGATGTGGAGCAAGCACGCCAACTGGgccggctacgtcgccgtttccgacgacgccacgtcgcgccgcctcggccgccgcgccatcaccatcgcctggcgcggcaccgtcACGCGCCTCGAGTGGGTGGCGGACCTCAAGGATTTCCTCAAGCCAATCTCATCCAACGGCGTGCCCTGCCCTGACGAAACGGTCAAGGTGGAATCAGGGTTTCTTGATCTCTACACGGACCGAGAAGAAAACTGCGGTTACTGCAAGTACTCGGCAAGAGAGCAAGTTCTAACCGAGGTGAAGAGATTGTTGGAGATGTATAGCAACGAGGAAGTTAGTATTACGATAACGGGACACAGTTTGGGGAGTGCGTTGGCGATTCTGAGCGCTTACGATATTGTGGAGACGGGGGTGAACGTGATGGGGGATAGCAGGGGCGTTTTGGTATCGGTGGTGTCGTTTTCGGGGCCCAGGGTGGGGAACAtgaggttcagggagaggttggaggtggggctgggggtgaaggtgttgagggtggTGAACCTCCACGATGTGGTGCCTAAGGCGCCTGGGGTGGTCTTTAATGAGCAGTTGCCGGCGGCGCTGATGAAGGTGGCGGAGGGGCTGCCGTGGAGCTACTCCCATGTTGGGGTGGAGCTGGCGTTGGACCACAAGAAGTCGCCGTTTCTTAACCCTAATGCGGATGCTGTCTGTGCTCATAACTTGGAGGCTCTTCTTCATCTGCTTGACGGATACCACGGAAAGGGTGAAAGATTCGTGCTAGCGAGTGGAAGAGATCCTGCTCTGGTGAACAAGGGATGTGATTTCCTGAAAGACCATTACATGATTCCACCAAACTGGAGGCAAGATGAGAACAAGGGCATGATCAGGAGCAATGATGGACGCTGGATGCAGCCTGAGCGACCAAAGCTTGATGATCACCCTGAAGATATGCATCACCACCTCAGACAATTAGGTCTGGCTTCATCTGATATTTGA 1476 0.4966 MATSTSISKTLIPFSKTQEASLRLPHRKFPRPNTRTHMPIKLAARDNSSASLVNYKPKLEEQLKRLPEAWRQIQGESDWAGLLEPMDPLLRAELIRYGEMAQACYDAFDFDPFSKYCGSCRFTPRAFFPSLHMSHIGYHVTRYLYATANINLPNFFNHSRWSKMWSKHANWAGYVAVSDDATSRRLGRRAITIAWRGTVTRLEWVADLKDFLKPISSNGVPCPDETVKVESGFLDLYTDREENCGYCKYSAREQVLTEVKRLLEMYSNEEVSITITGHSLGSALAILSAYDIVETGVNVMGDSRGVLVSVVSFSGPRVGNMRFRERLEVGLGVKVLRVVNLHDVVPKAPGVVFNEQLPAALMKVAEGLPWSYSHVGVELALDHKKSPFLNPNADAVCAHNLEALLHLLDGYHGKGERFVLASGRDPALVNKGCDFLKDHYMIPPNWRQDENKGMIRSNDGRWMQPERPKLDDHPEDMHHHLRQLGLASSDI 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01071 491 PANTHER PHOSPHOLIPASE A1-IBETA2, CHLOROPLASTIC 24 482 - -
Cca02g01071 491 PANTHER PHOSPHOLIPASE A1-IGAMMA2, CHLOROPLASTIC 24 482 - -
Cca02g01071 491 Pfam Lipase (class 3) 193 351 IPR002921 GO:0006629
Cca02g01071 491 CDD Lipase_3 131 383 - -
Cca02g01071 491 Gene3D alpha/beta hydrolase 69 477 IPR029058 -
Cca02g01071 491 SUPERFAMILY alpha/beta-Hydrolases 153 412 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01071 Cca-Chr2 27669104 27674476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01071 49 486 Acyl Lipid Metabolism Gene Families AT2G30550 66.817 0.0 626
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01071 - - gmx:100779676 836.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01071 02 27669104 27674476 Cca02g01071 02 27669104 27674476 ECH
Cca03g02170 03 42316449 42320630 Cca02g01071 02 27669104 27674476 PCT