Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02163 ATGCCTTTCACGATGAAGATTCAGCCAATTGATTTGCACGAGCCTCGGGAGGGGACTAGGCTTGAGCCGGTCAAGTCGGTGGTGAAGTCGCGCCTGAAGCGCCTCTTTGAGCGCCAATTCTCCGGCGTCCTTAGGAATCCGCCGCCGCCGGAGGAGCCGCATTTAGCTAAAGACGGCTCCGCTGATTTGGAACCGAATTCGGCGTGTTTAGCGAAAATGGTGCAGAATTTCCTGGAAGAGAATCACGAGAAAAACTCCGTTTCCGTCAAGTGTGCGCGTAACCGCTACAACAGCTTCGACGACAGCTCCGACGCCGAAACGCACGCGCTCGGTGGTTTCGGCGAGTCTAATTACTCTTTGTCCGGTGAAGCGCACGAAGTTCTCAAGGGTTTGGTGGCGTGTGCCAGTGTCTATGAGAGGAATTTGCTAGCGGACACTGCTAAGATCATTGAGAAGAACAAGGCGACGTGCAGACGCAAAGACGATTGTTGTAGAAAGATCGTTACGGAAGGGTTGTTAGGTCTCGGATACGATGCTTCCGTCTGCAAATCTCGCTGGGAAAAATCAAGTTTCTGCCCCGCTGGGGAATACGAATACATTGATGTGATAATGGGAAAGGAGAGGGTGGTGGTCGACGTTGACTTCAGATCAGAATTCGAGATTGCTCGACCCACCAAGGCATACAAAGCGATCCTCCAAACCCTTCCTTGTGTATTCGTTGGCACGTGTGATCGGTTGCAGAGTATCGTTGCCATCGCGTCAGAGGCGGCTAAGCTGAGTCTGAAGAAGAAGGGCATGCACGTGCCGCCCTGGAGAAAAGTCGAATACGTGAGAGCGAAATGGCTCTCCCCTTACACCTGCTCGCGTGGAGTCAAGGAGGAAACCCAAGAGAAAAACCACTTTGTCATGGGAAATGGGGCTAACCAGTCTCAACCGTTGATGTTAACTGTGTGTGAGTGCGATGATGAAAAGTCTAAGTCAAAGCTCCTGGTTCAGAAGCCATCCGAGATGAAACCCAAGAGCTCACAATCCGGTTTGGCAGCTGTCTTCCATGAAAACCCCTGA 1065 0.5192 MPFTMKIQPIDLHEPREGTRLEPVKSVVKSRLKRLFERQFSGVLRNPPPPEEPHLAKDGSADLEPNSACLAKMVQNFLEENHEKNSVSVKCARNRYNSFDDSSDAETHALGGFGESNYSLSGEAHEVLKGLVACASVYERNLLADTAKIIEKNKATCRRKDDCCRKIVTEGLLGLGYDASVCKSRWEKSSFCPAGEYEYIDVIMGKERVVVDVDFRSEFEIARPTKAYKAILQTLPCVFVGTCDRLQSIVAIASEAAKLSLKKKGMHVPPWRKVEYVRAKWLSPYTCSRGVKEETQEKNHFVMGNGANQSQPLMLTVCECDDEKSKSKLLVQKPSEMKPKSSQSGLAAVFHENP 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02163 354 MobiDBLite consensus disorder prediction 330 354 - -
Cca03g02163 354 MobiDBLite consensus disorder prediction 336 354 - -
Cca03g02163 354 PANTHER RNA POLYMERASE SUBUNIT BETA-BETA PROTEIN, PUTATIVE (DUF506)-RELATED 24 349 - -
Cca03g02163 354 Pfam PDDEXK-like family of unknown function 72 286 IPR006502 -
Cca03g02163 354 PANTHER OS03G0796600 PROTEIN 24 349 IPR006502 -
Cca03g02163 354 TIGRFAM A_thal_3542: uncharacterized plant-specific domain TIGR01615 165 286 IPR006502 -
Cca03g02163 354 MobiDBLite consensus disorder prediction 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02163 Cca-Chr3 42218387 42220727 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02163 - - gmx:100796711 553.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02163 03 42218387 42220727 Cca02g01086 02 27935615 27937768 PCT