Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02160 ATGGATGCAAATTCTTTTAGGCTCAACAAGGGTTCACCACTATGTTCAACTCACTTGAACCCCATCAAACGCGAACCACAACATCCTTCTGTCGTTGCAATGCTAAGAACCACACCTTCAGACCACGTTACTGCAAAAACAAAAACTAATGCCTACAACGATAACTTGTTTGATCGCTTAGCAATAAACCATCTATCAAAAAGTGTTCAAGCAGCCACAGGACTCAGCAACAATAAGAGTGGGTTTGAGAGCTTGGTTGAGGCAGCTACGGTGGCTAAACACAACTTTGACCCTATTCAGCAGCAAGAGGTTGTCATTCAAGCTCTTCACAAAGCCTTCCCAAAGCCCATACTTTCATTCATAAAGACAATACTACGACCATCTAAACTCTCAAGGGAATATTTTGCCGTTTTCACGACTTTGTTCTTTGCTTGGTTAGTCGGACCTTCCGAGGTGAGAGAATCGGAGGTCAACGGGCGAAGGGAAAAAAATATAGTCTACGTCAAAAAATGCAGGTTTTTAGAGGAGACAAATTGTGTAGGGATGTGTATTAATCTCTGCAAAATGCCATCTCAGAAGTTTATAAAGGACTCTCTTGGTATGTCAGTCAACATGGTCCCCAATTTTGATGACATGAGTTGTGAGATGATATTTGGACAGGATCCTCCAGCACAAATTGATGATCCAGCACTGAAGCAACCATGCTATAAACTATGCAAGGCATATAAAAACCATGGAACAGACTGCCTCAGTAGTTAA 759 0.4177 MDANSFRLNKGSPLCSTHLNPIKREPQHPSVVAMLRTTPSDHVTAKTKTNAYNDNLFDRLAINHLSKSVQAATGLSNNKSGFESLVEAATVAKHNFDPIQQQEVVIQALHKAFPKPILSFIKTILRPSKLSREYFAVFTTLFFAWLVGPSEVRESEVNGRREKNIVYVKKCRFLEETNCVGMCINLCKMPSQKFIKDSLGMSVNMVPNFDDMSCEMIFGQDPPAQIDDPALKQPCYKLCKAYKNHGTDCLSS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02160 252 PANTHER BETA-CAROTENE ISOMERASE D27, CHLOROPLASTIC 37 248 - -
Cca03g02160 252 Pfam Beta-carotene isomerase D27-like, C-terminal 145 224 IPR025114 GO:0005506
Cca03g02160 252 PANTHER BETA-CAROTENE ISOMERASE D27 37 248 IPR038938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02160 Cca-Chr3 42197364 42204284 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02160 K17911 - gmx:100813404 405.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02160 03 42197364 42204284 Cca02g01088 02 27971066 27977292 PCT