Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01088 ATGGATGCAAAATTGGTTGCACAGTGCACAAGTCCATCCCTAACTTTAACTCATTGGAAACCAAGACACCCTTTTGTTATTGGAGTTCTCTCGAGGCCTGCAATTGAAATTTCAGGAGAAAGAAGAAAAACTAATGTGTACAAAGATAGCTTGTTCGATCACATAGCCATAAACCACTTATCAAAATGCGTTCAAGAGGCAACAGGTTCACGTTCATTCCTTGTTAATTCATTTGAAGGAGTTTTGGATTTTTTCATTTTTCTTCTTCATTTTAATCCTATATATGCAGGACTCAAAAACAATAAGAGTGGGTATGAAAGCTTAGTAGAAGCAGTTAGGGTGGCTTCACAAAAATATAGTCCTATTCAACAACATCAACTTGTGACTCAAGCACTTGATAGAGCCTTCCCAAAGTCAATGCTTTTATTGATAAGGATATTGCTACCACCATCCAAATTCTCAAGGAAATGGTTTGCCTTCTTCACCACTTTGCTCTTTGTTTGGTTAGTTGGGCCATTGAGAGAATCGGAGGTGGATGGCAGAAGAGAAAAAAATGTAGTCCACATAAAAAAATGCAGGTTCTTAGAAGAGACAAACTGTGTAGGAATGTGTATCAATCTTTGCAAACTCCCATCTCAATCGTTTATAAAGGATTCTCTGGGTATGTCAATCAACATGATCCCCAATTTTGATGACATGAGTTGTGAGATGATATTTGGGCAGGATCCCCCAGAATCAATCGATGATCCAGCACTCAGGCAACCGTGTTTTAAACTATGCAAGGCAAAACAAAGCCATGGAACCAATTGCCTCGTTAATATTGCAACAGGTGTGGAATAA 840 0.3857 MDAKLVAQCTSPSLTLTHWKPRHPFVIGVLSRPAIEISGERRKTNVYKDSLFDHIAINHLSKCVQEATGSRSFLVNSFEGVLDFFIFLLHFNPIYAGLKNNKSGYESLVEAVRVASQKYSPIQQHQLVTQALDRAFPKSMLLLIRILLPPSKFSRKWFAFFTTLLFVWLVGPLRESEVDGRREKNVVHIKKCRFLEETNCVGMCINLCKLPSQSFIKDSLGMSINMIPNFDDMSCEMIFGQDPPESIDDPALRQPCFKLCKAKQSHGTNCLVNIATGVE 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01088 279 PANTHER BETA-CAROTENE ISOMERASE D27 40 72 IPR038938 -
Cca02g01088 279 PANTHER BETA-CAROTENE ISOMERASE D27 96 268 IPR038938 -
Cca02g01088 279 Pfam Beta-carotene isomerase D27-like, C-terminal 168 245 IPR025114 GO:0005506
Cca02g01088 279 PANTHER BETA-CAROTENE ISOMERASE D27, CHLOROPLASTIC 40 72 - -
Cca02g01088 279 PANTHER BETA-CAROTENE ISOMERASE D27, CHLOROPLASTIC 96 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01088 Cca-Chr2 27971066 27977292 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01088 K17911 - gmx:100782912 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02160 03 42197364 42204284 Cca02g01088 02 27971066 27977292 PCT