Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02152 ATGAGGAGTTTCTTCCCTGCTGAATCCTATAAAGAGGCTCATTCAAATGCTTTGAATCCTCAGTCTTGGCTCCAAATTGAAAGAGGGAAACTTCCCAAGTTGTCATCACACCCCTCATCTGCCTCAATAGAATCTCTGGTCAAGGTCCCCCAGCCAGCTATACTCCCTTTTTTTAAGCCTGCTGATTATGTGGAAGTTTTAGCTCAAATCCATGAAGAGCTTGAGTCTTGTCCGCCCCAAGAGCGGTCGAATCTGTTTTTGTTGCAATACCAGGTCTTTAGGGGCCGTGGGGAAGTTAAACTGATGCGTAGGAGCCTCCAGGGAGCTTGGCAGAGAGCCAACACTGTTCATGAGAAGATTATATTTGGGGCATGGTTGAAATATGAGAAGCAAGAGGAAGAGCTAATAGCTGACTTGCTTGCAAATTGTGGTAAATGTGCCAAGGAGTTTGCACCTGTAGATATAGCATCTCATCTTCCGTTTGATGTAAGTTCTGAGGGGAGAATGACCAACGAGAACCACATTTCACAAAATGTTACTTTTGTTATTGGAAATGAAAAGATAACTTGTGATAGACAAAGAATTTCTGAACTTTCGGTGCCATTTCATGCAATGCTTAAAGGGTATTTCAGTGAATCGCTCTGTGAGACTATAGATTTGTCTGAAAACAATATATCTCTTCCAGGTATGAAGGCAATAAGTGATTTCAGTTTGACTGGCAGTTTAATTGAGGTCCCTCCAAATCTTTTGTTGGAGATATTAGTTTTTGCAAACAAATATTGTTGTGAAAGACTTAAAGATGCTTGCGATAGAAGACTTGCATCCTTAGTTTCCTCCAAAGAAGATGCTTTGGAGCTCATGGAATACGCTCTCGATGAGCACTCAACTGTCCTTGCTGCATCTTGTTTACAAGTCCTTTTGCGTGATCTTCCAAACTGTTTGAATGACAATCGGGTGGTGGAGATATTTGTTCATGCTAATAAGCAGCAGCTAGCAGTCATGGTTGGGCCAGGTATATTTTCACTTTTCTGTTTCTTAAGTGAAGTTTCTATGAACCTTAATTCTAGTTCAGACACGACAGCTCATATCCTGGAACGGTTAGTTGAGTTTGCTGCGAGTGACAAACAGAGGCTGCTGGCTTTACATCAATTGGGATGTGTAAGACTCTTAAGGAAAGAATATGATGAAGCACGTTTTCTTTTTGAAGGGGCAGTAAATGCTGGCCATATATATTCTGTGGCAGGTTTAGCTAGACTGGACTATATAAAGGGTGATAAGTTTTTATCTTATGAGAAGCTCAGCTCAGTCATTTCATCTGTTACTCCTGTTGGATGGATGTATCAGGAAAGATCACTATACTGTGACAGTGACAAAAGGTGGGAAGACCTTGAGAAAGCAACTAATCTAGATCCTACTCTTATATATCCTTACATGTATAGAGCTGCCTCTTTAATGAGGACACATAATGCTCAAGCCGCATTAGCAGAAATCAATCGGATTCTTGGGTTCAAACTTTCACTTGAATGCATGGAAATAAGATTTTTTATCCATCTGGCTCTTGAGGACTACAAAGCAGCTCTATGCGATGTTCAAACAATTCTTACTTTGCGGTCTGATTATAGAATGTTTGAAGGGCGTGTTGCTGCATCCCAACTATGCACTCTTGTGCGTGAGCACGTTGAGCGTTGGACAACTGCAGATTGTTGGGCACGGTTATATGACTGTTGGTCTGCTGTTGATGATATCGGGTCTCTGTCTGTTATCTACCAGATGCTTGAATCTGATGCGGCAAAAGGTGTTCTGTACTTCAGACAGTCATTACTTCTCCTGAGGTTGAGTTGTCCCGAGGCTGCTATGCGGAGTTTACAGTTAGCTCGGCAACACGCATCAAGTGAGCATGAACGACTTGTATATGAGGGGTGGATCTTATATGATACAGGTCATTATGAGGAAGGGCTCCGGAAAGCTGAAGAGTCTATCAGTATTAAAAGATCTTTCGAGGCCTTTTTCTTGAAGGCCTATGCATTGGCTGACTCTAGTACAGATCCATCATATTCGTCAACTGTTATTTCACTTTTGGAAGATGCCTTGAAGTGTCCTTCAGATAATCTGCGCAAAGGTCAGGCACTGAACAATCTTGGAAGTGTTTATGTTGACTGTGGTAAATTGGACTTGGCTGCTGATTGTTATATCAATGCCCTTAAAATCCGACACACCCGAGCTCATCATGGTCTTGCTCGTGTTCATTGTCTTAAAGATGACAAGGCTGCTGCTTATAAGGAAATGACAGAACTTATTAAAAAGGCAAAAAACAACGCTTCTGCTTATGAGAAGAGATCTGAGTACTGTGATCGTGAACAAGCAAAGGCAGATCTGGAGATGGTCACTAGGTTAGATCCACTCCGGGTGTATCCTTATAGATATCGTGCTGCAGTATTGATGGACAGCCATAAGGAAGAGGAAGCCATTGCAGAACTCTCTAAAGCTATTGCATTCAAAGCTGATTTACATCTCTTACATCTACGTGCAGCATTCCATGAACACAAAGAGGATGTCCTAGGTGCTCTAAGAGACTGTCGTGCTGCACTCTCAGTGGACCCAAACCACCAAGAAATGTTGGAACTTCATAGTCGAGTTAATAGCCACGAGCCATGA 2655 0.4211 MRSFFPAESYKEAHSNALNPQSWLQIERGKLPKLSSHPSSASIESLVKVPQPAILPFFKPADYVEVLAQIHEELESCPPQERSNLFLLQYQVFRGRGEVKLMRRSLQGAWQRANTVHEKIIFGAWLKYEKQEEELIADLLANCGKCAKEFAPVDIASHLPFDVSSEGRMTNENHISQNVTFVIGNEKITCDRQRISELSVPFHAMLKGYFSESLCETIDLSENNISLPGMKAISDFSLTGSLIEVPPNLLLEILVFANKYCCERLKDACDRRLASLVSSKEDALELMEYALDEHSTVLAASCLQVLLRDLPNCLNDNRVVEIFVHANKQQLAVMVGPGIFSLFCFLSEVSMNLNSSSDTTAHILERLVEFAASDKQRLLALHQLGCVRLLRKEYDEARFLFEGAVNAGHIYSVAGLARLDYIKGDKFLSYEKLSSVISSVTPVGWMYQERSLYCDSDKRWEDLEKATNLDPTLIYPYMYRAASLMRTHNAQAALAEINRILGFKLSLECMEIRFFIHLALEDYKAALCDVQTILTLRSDYRMFEGRVAASQLCTLVREHVERWTTADCWARLYDCWSAVDDIGSLSVIYQMLESDAAKGVLYFRQSLLLLRLSCPEAAMRSLQLARQHASSEHERLVYEGWILYDTGHYEEGLRKAEESISIKRSFEAFFLKAYALADSSTDPSYSSTVISLLEDALKCPSDNLRKGQALNNLGSVYVDCGKLDLAADCYINALKIRHTRAHHGLARVHCLKDDKAAAYKEMTELIKKAKNNASAYEKRSEYCDREQAKADLEMVTRLDPLRVYPYRYRAAVLMDSHKEEEAIAELSKAIAFKADLHLLHLRAAFHEHKEDVLGALRDCRAALSVDPNHQEMLELHSRVNSHEP 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02152 884 PANTHER ETO1-LIKE PROTEIN 1 1 884 - -
Cca03g02152 884 SUPERFAMILY POZ domain 171 273 IPR011333 -
Cca03g02152 884 Coils Coil 752 779 - -
Cca03g02152 884 SUPERFAMILY TPR-like 690 875 IPR011990 GO:0005515
Cca03g02152 884 ProSiteProfiles TPR repeat profile. 707 740 IPR019734 GO:0005515
Cca03g02152 884 Gene3D Tetratricopeptide repeat domain 357 544 IPR011990 GO:0005515
Cca03g02152 884 Gene3D Tetratricopeptide repeat domain 783 883 IPR011990 GO:0005515
Cca03g02152 884 Gene3D Tetratricopeptide repeat domain 595 782 IPR011990 GO:0005515
Cca03g02152 884 SUPERFAMILY TPR-like 380 736 IPR011990 GO:0005515
Cca03g02152 884 SMART BTB_4 177 277 IPR000210 GO:0005515
Cca03g02152 884 PANTHER ETO1-RELATED 1 884 IPR044631 GO:0010105
Cca03g02152 884 Gene3D Potassium Channel Kv1.1; Chain A 168 317 IPR011333 -
Cca03g02152 884 SMART tpr_5 378 411 IPR019734 GO:0005515
Cca03g02152 884 SMART tpr_5 836 869 IPR019734 GO:0005515
Cca03g02152 884 SMART tpr_5 633 666 IPR019734 GO:0005515
Cca03g02152 884 SMART tpr_5 707 740 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02152 Cca-Chr3 42073595 42081755 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02152 - - gmx:100793740 1626.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02152 03 42073595 42081755 Cca02g01103 02 28257428 28262214 PCT