Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01103 ATGAGGACTTTCTTCACTGCAGAATCATGTAAAGAAGCACACCCTAATGCTTTAAATCCACAGTCCTGGCTCCAAGTTGAAAGAGGGAAGCTTCCCAAATTGTCATCACAGTCCTCCTCTGCATCAATAGAATCTCTAATCAAGGTCCCTCAGCCGCCTATACTCCCATTCTTCAAACCTGCTGATTATGTGCAAGTTTTAGCTCAAATTCATGAAGAACTTGAGTCGTGTCCTCCGCATGAGCAGTCAAATCTGTTTTTGTTACAATATCAGGTCTTTAAGGGCCTGGGGGATGCTAAACTGATGCGTAGAAGTCTCCGGTCAGCTTGGCAGAGAGCAAACACTGTTCATGAGAAGATTATATTTGGGGCATGGCTCAAGTATGAGAAGCAAGGGGAAGAGTTAGTTGCTCAGTTGCTCACAGCTTGTGGTAAATGTGAAAAGGAATTTGGCCCCATAGATGTAGAATCTCATATTCCTTTTGATAAAACTATAAGTTCCCCGGATAGAGTTTCCATGAATGGGAACAACGCTTCGCAATATGTTACCTTTACAATTGGAGATGAGAAGATAGTTTGTGATCGACAAAAGATTTCTGAACTTTCAGCACCATTTCATGCAATGTTAAAGGGGGGTTTCAGGGAATCGCTTTCTGAGACTATTGATTTGTCTGAAAACAATATCTCTCCTTCAGGTATGAAGGCAATAAGTTATTTCAGCATGACAGGGAGTTTACTTGATGTCCCTCCAAATCTTTTGGTGGAGATATTAGCTTTTGCAAATAAGTATTGCTGCGAAAGTCTAAAACAGGCTTGTGATAGAAGACTCGCATCCTTAGTTTCCTCCAGAGAAGATGCACTAGAACTCATGGAATGTGCTCTTGATGAGAATTCAGCTGTCCTTGCCACTTCTTGTTTACAAGTCCTTTTACGTGATATTCCCAACTGTTTGAGCGACAATAGGGTTGTGGAGTTATTTATTCATGCTAATAGGCAGCAGTTGGAAGTCATGGTTGGGCCTGGTATTTTTGCACTTTTTTGTTTCTTAAGTGAAGTTTCTATGAACCTTAATTCTAGTTCAGACACAACAGCCCATTTCCTGGAACGGTTAGTTGATTTTGCTGAAAATGACAAGCAGAGACGGCTGGCATTTCATCAATTGGGATGTGCTAGACTCTCAAGGAAAGAATATGATGAATCCTATTGTCTTTTTGAGAGGGCTTTAAATGCCGGTCATATTTATTCTGTTGCAGGTTTAGCTAGACTAGACTCTATAAAGGGTAAGAAGCTTTTATCTTATGAAAAGATCAGCTCAGTCATTTCTTCTGTTGCTCCACTTGGATGGATGTACCAGGAAAGATCTCTATACTGTGATGGGGATTTGAGGTGGAAAGACCTTGAGAAAGCAACTGAACTGGACCCTACTCTTGTATATCCCTACATGTATAGGGCTGCTTATTTAACGAGGACAGAGAATGTTAAAGGTGCACTGGCTGAAATCAACCGGATTCTTAGCTTCAAACTTTCATTAGAGTGCTTGGAACTACGGTTTTTTATCTATCTGGCCCTTGAGGACTACAAAGCAGCCCTCCGAGATGTTCAAGCTATTCTTACCCTGTGTCCTTATTATAGAATGTTTGAAGGGCGTGTTGCTGCATCTCAGCTCTGTACTCTTGTGCGTGAGCATGTTGGACATTGGACAACAGCAGATTGTTGGGCGCGATTATACGACTGTTGGTCCGCTGTTGATGATATTGAGTCTCTATCTGTTATCTACCAGATGCTAGAATCTGATGGAGCAAAAGGTGTTCTATACTTCAGACAGTCATTGCTTCTCCTCAGGCTAAACTGTCCCGAGGCAGCCATGCAGAGTTTACAGCTAGCTTGGCAACATGCATCAAGTAAGCATGAAAGACTTGTATATGAGGGGTGGATTTTGTATGACACTGGTCATTATGAGGAAGGGCTCCAAAAAGCTGAAGAGTCTATTAATATTAAAAGGTCTTTCGAGGCCTACTTCTTGAAGGCCTATGCATTGGCTGATTCTAGTGTAGATTCATCGTGTTCTATAACTGTTATTTCACTTCTGGAAGATGCCTTGAGGTGTCCTTCTGATAATCTGCGCAAAGGACAGGCCCTAAATAATCTTGGAAGTGTTTATGTTGACTGTGGGAAATTGGACTTAGCGGAAGACTGCTACATCAAGGCCCTTAAAATCCAGCACACCCGAGCTCATCAGGGTCTTGCTCGTGTTCATTTTCTCAAAGATGATAGGGCTGCTGCTTACAAGGAAATGACCAATCTTATCGAGAAGGCAAGAAACAATGCATCGGCGTATGAGAAGAGGTCTGAGTATGGTGATCGTGAACTCACAAAGGCAGATCTGGAGATGGTGACTAGATTAGATCCACTTCGGGTGTATCCTTACCGATATCGAGCAGCAGTTTTGATGGACAACCACAAGGAAGAGGAAGCGATTGGCGAACTGTCTAGAGCAATTGCATTCAAAGCTGATTTGCACCTCTTGCATCTACGTGCAGCATTCCATGAACACAAGGGAGATGTCTTAGGTGCGCTAAGAGACTGTCGTGCTGCACTCTCAGTAGACCCAAACCATCAAAAAATGTTGGAACTTCACTGTCGTGTTAATAGCCACGAGCCATGA 2664 0.4257 MRTFFTAESCKEAHPNALNPQSWLQVERGKLPKLSSQSSSASIESLIKVPQPPILPFFKPADYVQVLAQIHEELESCPPHEQSNLFLLQYQVFKGLGDAKLMRRSLRSAWQRANTVHEKIIFGAWLKYEKQGEELVAQLLTACGKCEKEFGPIDVESHIPFDKTISSPDRVSMNGNNASQYVTFTIGDEKIVCDRQKISELSAPFHAMLKGGFRESLSETIDLSENNISPSGMKAISYFSMTGSLLDVPPNLLVEILAFANKYCCESLKQACDRRLASLVSSREDALELMECALDENSAVLATSCLQVLLRDIPNCLSDNRVVELFIHANRQQLEVMVGPGIFALFCFLSEVSMNLNSSSDTTAHFLERLVDFAENDKQRRLAFHQLGCARLSRKEYDESYCLFERALNAGHIYSVAGLARLDSIKGKKLLSYEKISSVISSVAPLGWMYQERSLYCDGDLRWKDLEKATELDPTLVYPYMYRAAYLTRTENVKGALAEINRILSFKLSLECLELRFFIYLALEDYKAALRDVQAILTLCPYYRMFEGRVAASQLCTLVREHVGHWTTADCWARLYDCWSAVDDIESLSVIYQMLESDGAKGVLYFRQSLLLLRLNCPEAAMQSLQLAWQHASSKHERLVYEGWILYDTGHYEEGLQKAEESINIKRSFEAYFLKAYALADSSVDSSCSITVISLLEDALRCPSDNLRKGQALNNLGSVYVDCGKLDLAEDCYIKALKIQHTRAHQGLARVHFLKDDRAAAYKEMTNLIEKARNNASAYEKRSEYGDRELTKADLEMVTRLDPLRVYPYRYRAAVLMDNHKEEEAIGELSRAIAFKADLHLLHLRAAFHEHKGDVLGALRDCRAALSVDPNHQKMLELHCRVNSHEP 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01103 887 PANTHER ETO1-RELATED 1 887 IPR044631 GO:0010105
Cca02g01103 887 Pfam BTB/POZ domain 182 276 IPR000210 GO:0005515
Cca02g01103 887 Gene3D Tetratricopeptide repeat domain 361 547 IPR011990 GO:0005515
Cca02g01103 887 SUPERFAMILY TPR-like 463 779 IPR011990 GO:0005515
Cca02g01103 887 SMART BTB_4 180 280 IPR000210 GO:0005515
Cca02g01103 887 Gene3D Tetratricopeptide repeat domain 586 772 IPR011990 GO:0005515
Cca02g01103 887 Gene3D Tetratricopeptide repeat domain 784 885 IPR011990 GO:0005515
Cca02g01103 887 ProSiteProfiles TPR repeat profile. 710 743 IPR019734 GO:0005515
Cca02g01103 887 PANTHER ETO1-LIKE PROTEIN 1 1 887 - -
Cca02g01103 887 Pfam Tetratricopeptide repeat 711 740 IPR019734 GO:0005515
Cca02g01103 887 Coils Coil 762 782 - -
Cca02g01103 887 Gene3D Potassium Channel Kv1.1; Chain A 176 319 IPR011333 -
Cca02g01103 887 SUPERFAMILY TPR-like 694 880 IPR011990 GO:0005515
Cca02g01103 887 SUPERFAMILY POZ domain 182 276 IPR011333 -
Cca02g01103 887 SMART tpr_5 510 543 IPR019734 GO:0005515
Cca02g01103 887 SMART tpr_5 710 743 IPR019734 GO:0005515
Cca02g01103 887 SMART tpr_5 839 872 IPR019734 GO:0005515
Cca02g01103 887 SMART tpr_5 381 414 IPR019734 GO:0005515
Cca02g01103 887 SMART tpr_5 636 669 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01103 Cca-Chr2 28257428 28262214 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01103 - - gmx:100785039 1625.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02152 03 42073595 42081755 Cca02g01103 02 28257428 28262214 PCT