Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02150 ATGGAACCAAAGTGCACCACCATAAACTGTCGCCGCCCGGACTTTGTTCCGACCCCTCTGCCGGAGAGCCCTCGAGTGCCCATGGAGTTTCTCTCACGCTCATGGAGTGCCTCAGCTCTTGAGGTCTCCAAAGCACTCGCACCTCTCTCTTCTTCCATGACCAATTCCAACAACAACACTTCCATTCCCGAAGAAACCACTTCcaacaacaacaacaacaaTATCTCTTTCTCTGATGACTTCTCAGCAATGTCTAAAAACCACTTCCCTTTCGCCTCCTCTGCCACCTCTCAGCTTGTCCTGGAACGCATTATGTCACAGTCTGCAAGAGAGGAAGTGTCTCCGTTAACTTCAGGTAGGTTGTCTCACAGCAGCGAGCCTTTGAATGGTGGTGGTTCCTTAACCGGAACAGATAGCCCCCCAATTTCACCTTCAGATGAATTTGACGACCTTGTTAAGTTTTTTGGGGCAAACCATTCCATTCACCATTTATTCAATGGAGGACGAGCCACCATTGCGGCTGCAACAGCAGGCTCAACTGCACCCAACAAGGATGAGAAGATGGCAAAGACTGACATGGCTGTTGCTTCTGCAGCCACATTAGTTGCTGCACAGTGTGTAGAGGCTGCTGAAGCAATGGGGGCTGAGCGTGACCACCTTGCTTCTGTGGTCAGCTCTGCTGTAAATGTCCGTTCTCACGATGATATCACGACTCTTACTGCTGCAGCTGCCACTGCTCTACGAGGAGCAGCAACCTTGAAAGCAAGAGCTTTGAAGGAGGTGTGGAATATTGCCACAGTGACACCACTAGAGAGAGGCATAGGGGGGATTGGACTGTGTGGTAAAAGTATCAACAGTAATACTAATACCAGCAATACCAGTACCAGTGATAGTGGGGAAGTTTTCAATGGAGAAAATTTTCTGGGTGCCTGCAGTCAAGAGCTACTTGCTAAAGGCAGTGAATTACTCAAGCGCACCCGTAAAGGTGACCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACAGGCCAGGTAATGCTGAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAGAAAAAGAATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGAAGACATCTGTTTGATGATGGTGAAAAGCGACGGTACTTTGGACTGAAGACAGATGCAAGGGGGATTGTGGAGTTTGAATGTCGAAATCAAAGAGAATATGATATATGGACACAAGGGGTTTCGAGGCTTCTCTCCATTGTTGCACAAAGACAAAACAACAGATATGGGAATTGA 1311 0.4676 MEPKCTTINCRRPDFVPTPLPESPRVPMEFLSRSWSASALEVSKALAPLSSSMTNSNNNTSIPEETTSNNNNNNISFSDDFSAMSKNHFPFASSATSQLVLERIMSQSAREEVSPLTSGRLSHSSEPLNGGGSLTGTDSPPISPSDEFDDLVKFFGANHSIHHLFNGGRATIAAATAGSTAPNKDEKMAKTDMAVASAATLVAAQCVEAAEAMGAERDHLASVVSSAVNVRSHDDITTLTAAAATALRGAATLKARALKEVWNIATVTPLERGIGGIGLCGKSINSNTNTSNTSTSDSGEVFNGENFLGACSQELLAKGSELLKRTRKGDLHWKIVSVYIHRTGQVMLKMKSRHVAGTITKKKKNVVLDICTDLPAWPGRHLFDDGEKRRYFGLKTDARGIVEFECRNQREYDIWTQGVSRLLSIVAQRQNNRYGN 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02150 436 Pfam Auxin canalisation 170 272 IPR008546 -
Cca03g02150 436 Pfam Auxin canalisation 21 166 IPR008546 -
Cca03g02150 436 PANTHER EXPRESSED PROTEIN 170 432 IPR040269 -
Cca03g02150 436 PANTHER AUXIN CANALIZATION PROTEIN 2 171 - -
Cca03g02150 436 PANTHER AUXIN CANALIZATION PROTEIN 170 432 - -
Cca03g02150 436 MobiDBLite consensus disorder prediction 110 142 - -
Cca03g02150 436 MobiDBLite consensus disorder prediction 110 145 - -
Cca03g02150 436 MobiDBLite consensus disorder prediction 50 74 - -
Cca03g02150 436 Pfam Plant pleckstrin homology-like region 321 426 IPR013666 -
Cca03g02150 436 PANTHER EXPRESSED PROTEIN 2 171 IPR040269 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02150 Cca-Chr3 42060833 42064332 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02150 - - gmx:100805743 662.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02150 03 42060833 42064332 Cca03g02150 03 42060833 42064332 ECH
Cca03g02150 03 42060833 42064332 Cca02g01107 02 28339312 28342805 PCT