Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01107 ATGGAACCCAAGTTCACAATGAATTGTCGTCCAAAAAGTGACAATCATTTACCAGAGAGTCCAAGAGTACCAATGGAGTTTCTGTCAAGATCATGGAGTGCCTCTGCTCTTGAGCTCTCTAAAGCCCTTGCACCTCCTTCTTACATACCTTCCAAGCCTCCTATTCCTACTCCTAATGCCTCCTCTTGTGTCACCAACTCTTCCATTTCCGAAGAAACTTCTGCTCACTCACAGGAACTCTCAACCATGTGTGGCAACCAGTTCTCTTTTGCTTCCTCTGCCACCTCACAGCTTGTCCTTGACCGCATTATGTCACAGTCCGCAAGAGAGGAGGTGTCTCCATTGACGTCAGGGAGACTGTCTCACAGCAGTGAACAACCTTTGAACGGTGCTGCTTCTTTAACCGGAACAGATAGTCCTCCAATTTCTCCTTCTGACGAGTTTGATGATCTTGTCAAGTTTTTTCGGGCAAATAACTCCATTCATCCTTTATTCAATGGTGTACGAACCATGAGTGGTGCTACAGGCAATGCCACTCCTTGCTCCGGACCTAAAACAGTTGGAAGATGGTTgaaagacagaagagaaaagaagaaagaagaaaacagaaCCCATAATGCTCAACTGCATGCTGCAATTTCTGTAGCTTCCGTGGCAGCTGCAGTAGCGGCCGCCACGTTAGTTGCTGCTCAGTGTGTAGAGGCTGCTGAAGCAATGGGAGCTGAGAGAGATCACCTTGCTTCTGTGGTTAGCTCTGCAGTCAATGTCCGTTCTCATGATGATATCACAACACTTACAGCTGCAGCTGCCACAGCTCTACGAGGGGCAGCAACCTTGAAAGCAAGAGCATTGAAGGAGGTGTGGAATATTACTGCAGCGAAGCCACTAGAGAGAGGCAAGGGAATTGGAATATGCGGTAAAGGGAATAACAGTAATTCTAGCACCAGTGATAGTGGAGAGATTGTCAATGGTGGAAATTTTTTGGGTGCCTGCAGCCAAGAGATCCTTGCTAGGGGCACTGCATTACTCAAACGGACCCGCAAAGGTAATTCCAGTAACAAACACAGCTATATATTATCTCTCTCATTTGCAGTAAGATTAAACTCCATTTTGGCAAAAACTGTAGGTGATCTTCACTGGAAAATAGTTTCAGTTTATATACATAGAACGGGCCAGGTGATGCTGAAAATGAAGAGCAGACATGTAGCAGGAACCATTACCAAAAAGAAAAAGAATGTTGTGTTAGATGTGTGCACAAATTTAGCAGCGTGGCCAGGAAGGCATTTGCTTGATGAGGGTGAAGAGAGAAGGTACTTTGGATTGAAGACAGAAGGAAGGGGGATTGTGGAGTTCGAATGTAGAAATCAAAGAGAGTATGATATTTGGACTCAAGGGGTTTCAAGACTTCTTTCCATGGTTGCACGCTTACAAAACACAAATGGTGTTTGA 1449 0.4424 MEPKFTMNCRPKSDNHLPESPRVPMEFLSRSWSASALELSKALAPPSYIPSKPPIPTPNASSCVTNSSISEETSAHSQELSTMCGNQFSFASSATSQLVLDRIMSQSAREEVSPLTSGRLSHSSEQPLNGAASLTGTDSPPISPSDEFDDLVKFFRANNSIHPLFNGVRTMSGATGNATPCSGPKTVGRWLKDRREKKKEENRTHNAQLHAAISVASVAAAVAAATLVAAQCVEAAEAMGAERDHLASVVSSAVNVRSHDDITTLTAAAATALRGAATLKARALKEVWNITAAKPLERGKGIGICGKGNNSNSSTSDSGEIVNGGNFLGACSQEILARGTALLKRTRKGNSSNKHSYILSLSFAVRLNSILAKTVGDLHWKIVSVYIHRTGQVMLKMKSRHVAGTITKKKKNVVLDVCTNLAAWPGRHLLDEGEERRYFGLKTEGRGIVEFECRNQREYDIWTQGVSRLLSMVARLQNTNGV 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01107 482 MobiDBLite consensus disorder prediction 1 19 - -
Cca02g01107 482 Pfam Plant pleckstrin homology-like region 374 473 IPR013666 -
Cca02g01107 482 Pfam Auxin canalisation 18 225 IPR008546 -
Cca02g01107 482 Pfam Auxin canalisation 224 298 IPR008546 -
Cca02g01107 482 MobiDBLite consensus disorder prediction 52 78 - -
Cca02g01107 482 MobiDBLite consensus disorder prediction 110 142 - -
Cca02g01107 482 MobiDBLite consensus disorder prediction 110 145 - -
Cca02g01107 482 PANTHER EXPRESSED PROTEIN 223 351 IPR040269 -
Cca02g01107 482 PANTHER EXPRESSED PROTEIN 10 224 IPR040269 -
Cca02g01107 482 PANTHER EXPRESSED PROTEIN 356 480 IPR040269 -
Cca02g01107 482 PANTHER AUXIN CANALIZATION PROTEIN 223 351 - -
Cca02g01107 482 PANTHER AUXIN CANALIZATION PROTEIN 10 224 - -
Cca02g01107 482 PANTHER AUXIN CANALIZATION PROTEIN 356 480 - -
Cca02g01107 482 MobiDBLite consensus disorder prediction 1 22 - -
Cca02g01107 482 MobiDBLite consensus disorder prediction 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01107 Cca-Chr2 28339312 28342805 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01107 - - gmx:100782024 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01107 02 28339312 28342805 Cca02g01107 02 28339312 28342805 ECH
Cca03g02150 03 42060833 42064332 Cca02g01107 02 28339312 28342805 PCT