Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02146 ATGGCGACTCTGTCCCATGCTGATTCTAAAAGAAAGTATTCATGGTGGTGGGACAGTCACATCAGCCCCAAGAACTCCAAATGGCTCCAAGAGAATCTCACAGATATGGATTCCAAGGTGAAGCTAATGATCAAGCTTATTGAAGAAGATGCAGATTCCTTTGCCAGAAGGGCAGAAATGTATTATAAGAAACGCCCAGAGCTTATGAAATTAGTTGAAGAGTTTTACCGTGCATACCGGGCATTGGCTGAGAGATATGATCATGCAACTGGAGTGATACGACAGGCTCATCGTACCATGGCTGAAGCATTTCCTAATCAAGTTCCCCCGGCACCAGCAGATGATTTACCTGGAGTTTCTTCCATAGAGGTTGAGCCACATACACCAGAGACACTCCGCTTTTCACATGCATTTCTTGACTCAGATGAATCGCAAAAGGATGCTTCAACACCTTTCCATGCCATCAAACTAGCTGATTCTGCTTTAAGCAAAAAGGGTTTGAAACAGCTGAATGATCTTTTCATGTCAGGAGAACCTGAAAGTCATGCAAAGTCTGCAGAAGGGCGTGTTAGAAGGGGGCTCAATTTTCTTGACACAGAGGAGATTAATGGGAAAGACAATGGAAGCCAAGATACAAGGGCTCAAGTCTTATCTGAGTCTGAAAGGATGACAAAAGCCGAGATAGAAATTTTGGCCTTGaagacagctcttgctaagttagaaagtgagaaggaggctggcttgcTTCAGTATCAGCAGAGTTTGGAGAGATTGTCTAATCTGGAATCAGAAATGTCTTGTGCAAGAGAGAATTCTCAAGGACTTAATGAACGAGCAAACAAAGCTGAAGCTGAAGTTCAAACCTTGAAGGAAGCTCTTATTGAATTACAGGCTGAAAGACAAGCTAGTCTTCTTCAGTACCAGCAATGCTTGGAGAAAATACGCACTCTGGAGACTAGTATTTCTTCTGCTCAAAAGGATGTAGGAGAACTTAATGAACGAGCTGCTAGAGCTGAAAATGAAGCTGAATCCTTAAAGCAAGACCTTGCTAGAGTTGAAGCTCAAAAGGAAACTGCCCTTGTTCAATATAACCAGTCCTTGGCGATGTTATCAAAACTAGAGGAGAGATTAGTACAAGCTGAAGAGAACGCAAGGAGAATTAATGAGCAATCTAATGCAGCAAAACATGAGATCGAGGGCATGAAGTTAGAAATTGCTAAACTCACTGAAGAGAAGGAAGATGCAGCTCTTCGTTATCAACAATGCTTGCAGATTATTTCCACTTTGGAGCATAAACTGTCTTGTGCCGAAGAGCAGATGCAAAAGCTAAATTGCAAGATAAATGATGGGGTTGAAAAGTTACGTAGTTCTGAACAGAAGTGCATTCTCTTGGAAACATCAAATCAGACTCTGCAATCTGAATTGCATTCTTTGGCACAGAAGTTGGGGTCTCAAAATGAAGAACTCGGTGAGAAGCAGAAGGAGTTGGGTAGACTTTGGACTTGCGTACAAGAGGAGCGATTACGATTCATTGAGGCTGAAACTGCTTTCCAAACTCTTCAGAATTTGCATTCTCAATCTCAGGAAGAGCTAAGATCTCTTGCCACCGAGCTTCATGGTAAGACTGAAATTCTGGAGAATATGGAATCCCATAAGCGAACTTTAGAGGATGAAGTACACAAGGCCAAGGCGGAAAACAAAACTCTAAACGAGGTCAAATTATCGTCATCTTTGTCTATAAAAAATTTGCAAGATGAGATATTAAATCTGAGGGAGATAATAAAGAAACTTGAGCTGGAGGTTGGACTTCAGGTCGATGAAAGAAATGCTCTTCAGCAAGAAATTTACTGTCTTAAAGATGAGCTGAATGATGTGAATAAAAGACATGAAGCCATGATGGAGGATGTCAGATCAACTGACCTAGATCCACAGTGCTTTGGCTCATCTGTGAAGAAATTGCAAGATGAGAACTCAAAGCTGAAGGAAAGCTGTGAAACCTACAAGGATGAGAAATCAACTCTAAAGGGAAAACTGGAAATCATGGAGCAGCTTTTGGAGAAGAATGCTGTTTTGGAGAGATCCATTTCAGGTTTGACTGTTGAGCTGGAGAGTGTTCGAGGAAAGGTAATGGTATTGGAAGAATCGTGTGAATCTTTGCTTGGGGAAAAATCCACTCTTGCTGCTGAGAACGCCACCTTGTTTTCTCAGTTACAAACCACAGCTGAAAAGCTGGAGAAGCTCTCAGGAAAAAACAACCTTTTAGAAAATTCACTTCTTGATGTGAATGCTGAGATTGAAGGATTGAGGATAAAGTCAAAGATTTTAGAAGACTCTTGTATGTTGCTTGACCATGAGAAGTCCAGTCTCACCTCTGAGAAAGAAACCTTAAGTTCACAATTGAACATCACTCATCAAACACTGAAAGATCTTGGGAAACAACACGGTGAATTGGAACTGAAGCATTTGGAACTGCAAGCAGAAAGGGAGTCTGCACTTCAAAAGTTGGAAGAGCTGCTTGTTTCCTTATATGCTGAGAGGGAAGAGCATTCCAGAATTGCGCAAATGAATGAATGTCACTTGGCTGAGAAGGAATTACAAATTTTTGTTCTCCAAGAAGATGCAAATTACCTGACAAAGGAATATGAAGAAGAATTGGACAGAGCTGCACATGCTCAAATGGAAATTTTCATCTTGCAGAAATGTATCCAGGATTTGGAGCAAAGGAACTTCTCCCTGTTAGTTGAGTGTCAGAGACTCTCGGAGGCTTCCAAACTTTCTAGTATATTGATATCTAAATTGGAGAATGACAATGTTCAAAAGCAAGTTGACGTGAATTTGTTGTCTGAGAAAATTAAAATACTAAGGATTGGGCTGCTTCAAGTGTTAAAGACTCTTGACGTTAACAGTGAGCCTTGGTGTGAAGATATGATTGAAGAAGACCAGGAGCTTCTGAACCATATACATGGCAAACTTCAAGAGACACAAAATTATTTTGTCACAATGTTCAATGAAAGCCAGCAAGTTGCCATTGAGAATTCAGTTCTTGTTACATTCCTTGGCCAGTTGAAGTTAAAGGCTGAAAATCTTTTGACAGAAAGAGATTCCCTTGATAAGGAGTTGAGAACCCAGTCTAAGCAGTTCTTGGCATTGCAAGAAGAGGTACAAAAGATATTGGAGAAGAATCAAGAATTAAAGTTGACAATAAGCAAAGGAGAAGAGAAAATGGAAGTAATGACAACTGAAATAGAGAGTTTATGCAAACAGCTGTTAGACTTGAAAGAAGATAACCAAAACATAAAGGAAGAAAGTTGCAAAATCTTTGAAGAGAAAAATTCCTTGATGAGAAGATTTATGGACCTGAGTGAAGAGAAAAGCAAGTTGGAAGAAGAAATCTGTGTTATGATTCACGAGACAATAGCACAATCTAATATTTCTCTGATCTACGAGAACATTGTCTTTGAAAAACTCCTGGCACTTAAAGAACTAAGCAAATATCTTGATAGACTTTGTTCAGTAAATAACGACCTTGAGGAGAAATTAAAAATAATGATGGGCAAATTAGAAGATGTTCAGATGGAAAATTCAGATCTTAAAGAGTCCTTTGTAGCGTCAAGCATTGAACTAAAATTAGTTCAATCTGTTAATGATCAATTAAACTGTCAGATTAGGAATGGAAAGGAATTGTTGTCTCAAAAGGAAAATGAGATTTTGGAAGCAGCAGCAATGTTTAGCACTTTACATGATGAGAAAACAGAATTGCAAAGATTGTTGGAAGATCTGAAGAGCAAGTATGATGAAGCCAGGGTGATACTTGAGGACCAAGCGAGTCAAATTTTAAAATTATCCTCAGACAAGGATCGTCAAAATGACGAGCTTAGATGCCTTTGTGAAGTGAATCAGAAGTTGGAGGCAGAAATGAGGCACCTGCATCAACAACTTGGAGAAACTAAACTGAGGGAAGAGAAGTTAAGTCATGAACTACGTAAGGAAACAAATGAGATAGAACAATGGGAAACTCAGGCGGCCACACTCTATACCAGACTGCAGGTTTCTGCTGTCAATGAGACTTTATTTGAAGAGAAGGTCCGTGAGCTAGCTGATGCATGTGAAGATCTTGAACGCAGAAGCAACTTTAAAGGCATGGAAAGTGAAATGCTGAAAGAAAGAGTTAACAAGTTGGAAGGTGAAAATGGAAGACTACGTGGTCAGTTGGCTGCTTATGTCCCAGCTGTCAGTGCTTTGAATGATTGTATAACATCCTTGGAGATGCAGACACTAGCACATACAAAACCTTGTGACTACAAAGTATCAAAGGTTGAAGATTTGGTGAATCACAAATGCACTGAAGGTGGTCCACAAACAGGTGAAGATCAGAATGCTACGGCAACAATTGCACTTCCAGATTTCCAAGACATGCAGAAAAGGATCAATGCAATTGAAATGGCTGTTAAACAGATGAATGAAAGTTTCAAAACTAAGGATGAAATGAGAGAGATTCAAATGTTAAAATCTGGAAGCAGTCGCCGCCAAGGAAATATTCATGCAATTAAGTATTTTACTGAAATGTATGAAGCAAAGGAGCACCGAGGTGGGCCTGCTGATGAACAGAAGATGAAAAAATCAGTGTCAGATGTCCCTGTAGCAGAAATTGAAGTTCTGCCAAAAGATATCATGCTTGATCAAACATCTGAATGTTCATACGGGATAGGCAGGAGAGGAACTCTTGAGACTGATGATCAGATGCTTGAATTGTGGGAAACTGCTAATAAGGATGGTGTTATCGGCCTGACAGTTGGCAAGGTGCAGAAGCCAGCCACTGCACCTACTGGATACTATCAAAAGAGAGCAACCAGGGAACCCAAAAACAAATATCATTCAGTAGAATCCTTGATTGAGAAGGAGTTGAGTGTGGACAAATTAGAGATCTCGAGAAGATCGACACAGCAACACCCACGTCCACATCCACATGAAGAAGGCGACAAGAGGAAGATTTTAGAAAGACTTGATTCTGATGCTCAAAAGTTGACAAACCTTGAAATTACAGTGCAAGATTTGATGAGTAAGATCGAAATTACTGAGAGCACAAAGTTAAAAGGTGTTGAGTATGATACAGTGACAGGACAGCTTGAAGCTACTCAGGAAGCCATCACAAAGTTGTTTGATGCCAACCACAAGTTGAAGAGGAATGTAGAAGAGGGTACCTCGTCCTTTGCTGGGAAGTTCACAGCAGAATCAGATGAAAGTGGAAGTGTCAGCAGAAGGAGAGTTTCAGAACATGCTCGGAGAGGGTCTGAAAAAATAGGAAGGCTGCAGTCGGAGGTGCAAAGATTACAATTCTTACTTCTGAAGTTGAATGATGAGAAGGAAGGCAAAGGAAAAACAGTTATTGATGAACGAAATTCAAAAGTCCTTTTGAGAGATTATCTCTATGGTGGGACaagaagaaactaccagaagaagaagaagaaAACACCCTTTTGTGGATGCATGCAGCCTCCTACTAAGGGAGATTAA 5514 0.3963 MATLSHADSKRKYSWWWDSHISPKNSKWLQENLTDMDSKVKLMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDHATGVIRQAHRTMAEAFPNQVPPAPADDLPGVSSIEVEPHTPETLRFSHAFLDSDESQKDASTPFHAIKLADSALSKKGLKQLNDLFMSGEPESHAKSAEGRVRRGLNFLDTEEINGKDNGSQDTRAQVLSESERMTKAEIEILALKTALAKLESEKEAGLLQYQQSLERLSNLESEMSCARENSQGLNERANKAEAEVQTLKEALIELQAERQASLLQYQQCLEKIRTLETSISSAQKDVGELNERAARAENEAESLKQDLARVEAQKETALVQYNQSLAMLSKLEERLVQAEENARRINEQSNAAKHEIEGMKLEIAKLTEEKEDAALRYQQCLQIISTLEHKLSCAEEQMQKLNCKINDGVEKLRSSEQKCILLETSNQTLQSELHSLAQKLGSQNEELGEKQKELGRLWTCVQEERLRFIEAETAFQTLQNLHSQSQEELRSLATELHGKTEILENMESHKRTLEDEVHKAKAENKTLNEVKLSSSLSIKNLQDEILNLREIIKKLELEVGLQVDERNALQQEIYCLKDELNDVNKRHEAMMEDVRSTDLDPQCFGSSVKKLQDENSKLKESCETYKDEKSTLKGKLEIMEQLLEKNAVLERSISGLTVELESVRGKVMVLEESCESLLGEKSTLAAENATLFSQLQTTAEKLEKLSGKNNLLENSLLDVNAEIEGLRIKSKILEDSCMLLDHEKSSLTSEKETLSSQLNITHQTLKDLGKQHGELELKHLELQAERESALQKLEELLVSLYAEREEHSRIAQMNECHLAEKELQIFVLQEDANYLTKEYEEELDRAAHAQMEIFILQKCIQDLEQRNFSLLVECQRLSEASKLSSILISKLENDNVQKQVDVNLLSEKIKILRIGLLQVLKTLDVNSEPWCEDMIEEDQELLNHIHGKLQETQNYFVTMFNESQQVAIENSVLVTFLGQLKLKAENLLTERDSLDKELRTQSKQFLALQEEVQKILEKNQELKLTISKGEEKMEVMTTEIESLCKQLLDLKEDNQNIKEESCKIFEEKNSLMRRFMDLSEEKSKLEEEICVMIHETIAQSNISLIYENIVFEKLLALKELSKYLDRLCSVNNDLEEKLKIMMGKLEDVQMENSDLKESFVASSIELKLVQSVNDQLNCQIRNGKELLSQKENEILEAAAMFSTLHDEKTELQRLLEDLKSKYDEARVILEDQASQILKLSSDKDRQNDELRCLCEVNQKLEAEMRHLHQQLGETKLREEKLSHELRKETNEIEQWETQAATLYTRLQVSAVNETLFEEKVRELADACEDLERRSNFKGMESEMLKERVNKLEGENGRLRGQLAAYVPAVSALNDCITSLEMQTLAHTKPCDYKVSKVEDLVNHKCTEGGPQTGEDQNATATIALPDFQDMQKRINAIEMAVKQMNESFKTKDEMREIQMLKSGSSRRQGNIHAIKYFTEMYEAKEHRGGPADEQKMKKSVSDVPVAEIEVLPKDIMLDQTSECSYGIGRRGTLETDDQMLELWETANKDGVIGLTVGKVQKPATAPTGYYQKRATREPKNKYHSVESLIEKELSVDKLEISRRSTQQHPRPHPHEEGDKRKILERLDSDAQKLTNLEITVQDLMSKIEITESTKLKGVEYDTVTGQLEATQEAITKLFDANHKLKRNVEEGTSSFAGKFTAESDESGSVSRRRVSEHARRGSEKIGRLQSEVQRLQFLLLKLNDEKEGKGKTVIDERNSKVLLRDYLYGGTRRNYQKKKKKTPFCGCMQPPTKGD 1837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02146 1837 MobiDBLite consensus disorder prediction 1747 1764 - -
Cca03g02146 1837 SUPERFAMILY Tropomyosin 393 639 - -
Cca03g02146 1837 Gene3D - 221 390 - -
Cca03g02146 1837 Coils Coil 902 922 - -
Cca03g02146 1837 Coils Coil 1469 1489 - -
Cca03g02146 1837 Coils Coil 1767 1787 - -
Cca03g02146 1837 Coils Coil 468 488 - -
Cca03g02146 1837 Coils Coil 1243 1277 - -
Cca03g02146 1837 Coils Coil 1110 1130 - -
Cca03g02146 1837 Coils Coil 223 243 - -
Cca03g02146 1837 Coils Coil 580 639 - -
Cca03g02146 1837 Coils Coil 545 572 - -
Cca03g02146 1837 Coils Coil 1019 1102 - -
Cca03g02146 1837 Coils Coil 807 852 - -
Cca03g02146 1837 PANTHER KINASE INTERACTING (KIP1-LIKE) FAMILY PROTEIN 1 1837 - -
Cca03g02146 1837 Coils Coil 1355 1375 - -
Cca03g02146 1837 MobiDBLite consensus disorder prediction 1742 1764 - -
Cca03g02146 1837 Pfam KIP1-like protein 14 87 IPR011684 GO:0003779
Cca03g02146 1837 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 13 93 IPR011684 GO:0003779
Cca03g02146 1837 Coils Coil 930 950 - -
Cca03g02146 1837 Coils Coil 426 453 - -
Cca03g02146 1837 Coils Coil 1675 1695 - -
Cca03g02146 1837 Coils Coil 650 701 - -
Cca03g02146 1837 MobiDBLite consensus disorder prediction 1643 1664 - -
Cca03g02146 1837 Coils Coil 1285 1347 - -
Cca03g02146 1837 Coils Coil 251 418 - -
Cca03g02146 1837 Coils Coil 737 771 - -
Cca03g02146 1837 PANTHER PROTEIN NETWORKED 4A 1 1837 - -
Cca03g02146 1837 Coils Coil 1159 1193 - -
Cca03g02146 1837 Coils Coil 1383 1403 - -
Cca03g02146 1837 Coils Coil 1709 1729 - -
Cca03g02146 1837 Coils Coil 1215 1235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02146 Cca-Chr3 42004624 42011704 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02146 - - gmx:100810726 2989.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02146 03 42004624 42011704 Cca03g02146 03 42004624 42011704 ECH
Cca03g02146 03 42004624 42011704 Cca02g01111 02 28399664 28407148 PCT