Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01111 ATGGCGCATCTGTCTCAAGCAAATTCTAGAAGAATGTATTCATGGTGGTGGGACAGCCACATAAGCCCCAAAAACTCAAAATGGCTCCAGGAAAATCTGACAGATATGGATGTCAAGGTGAAGCAAATGATTAAGCTTATTGAAGAAGATGCAGATTCTTTTGCCAGGAGAGCAGAAATGTATTATAAAAAACGCCCGGAACTTATGAAAATGGTTGAAGAGTTTTATCGAGCATATCGGGCATTGGCTGAGAGATATGATCATGCAACTGGAGTCATCCGCCATGCCCACAAGACCATGACTGAGGCATTTCCTAATCAAGTTCCTATGATGCTGACAGATGATTTACCTACTGAGCCACTTACTCCAGATATGCGCCACCCTTCACGTGCGTTTCTTGATCCAGATGAACCACAAAAGGATGCTTCCGCTCGTTTGCATGCTATCAAAAGAAATGGTGCTTATTCTGGTGAACCCGATTCTGCTATGAACAAAACAGGTTTGAAACAGCTCAATGATCTCTACGTCCCTGGAGAACCTGAAAATCATACAAAGTTTGTAGAAGGGCATGCTAGAAGGGGGCTCAGTTTTTTTGAGATGCAGGAGGAGAGTAGTGACCTAAACAATGGAAGCAACATTACTGGATCTCAAGTCTTGTCTGAGTCTGAACGCATGACAAAAGCTGAGACAGAAATTTTGGCCTTGAAGAAAGCCATTGCCAAATTAGAAGAAGAAAAGGAGGCTGGCTTGCTTCAGTATCAGCAGAGTTTGGAAAAATTGTCTAATCTGGAGTCAGAAGTGTCTAGTGCGCAAGCAAATTCTCAAAGACTTGATGAGCGAGCAAGTAAAGCTGAAGCTGAAGTTCAAGCCTCAAAGGAAGCCCTAATCAAATTACAAGCTGAAAGTGAAGCCTGTCTTCTACAGTACCAGGAATGCTTGGAGAAAATATCTAATCTGGAGAAAAATATTTCTTCTGCACAGAAGGAAGCAGGAGAACTTAATGATCGAGCTACTACTGCTGAAAATGAAACTGAGTCCTTAAAGCAGGAACTTGCTAGAGTAGAAGCTGAAAAGGAAGCAACCCTTGTTCAATATAAAGAGTGTTTGGAGACAATATCAAAACTGGAGGAGAGATTAGCAGAAGCTGAGGAGAATGCAAGAAGAATTAAGGATCATGCCAATATAACAGAAAATGAAATTGAGGCTTTGAAATTAGAAGTTACTAAACTTAATGAAGAAAAGGAAGATGCTGCTATCCGTTATCAGCAATGCTTGGAGATAATTTCCAGTTTGGAGTATAAACTCTCTTGTGCTGAAGAGGAGGTGCGTAGGCTAAAGTCCAAGATAGATGATGAGGTTCAAAAGTTACAGAGTTCTGAACAAAAATGTCTTCTCTTGGAGACATCCAATCACTCTATGCAGTCTGAATTACAATCTTTGGCACAAAAAATGGAGTCTAACAATGAAGAAATTAATGAGAAGCAGAAGGAATTGAATAGACTTTGGGGTTGCATACAGGAGGAGAGATTGCGATTCATTGAGGCTGAAACTGCTTTCCAAACTCTTCAGCAGTTGCATTCTCAATCTCAGGAAGAGCTTAGATCTCTTGCTGCTGACTTTCATAGTAAAGTGGAAATACTGGGGAATGTGGAATCACGTAAGCAGGCTTTAGAAGACGAAGTACTCAGGGTGACTGAGGAAAACAAAATTCTAAACGAGGTCAAAATTTCCTCGTCTTTGTCTATAAAGAATTTGCAGGAGGAGATTTTGAATTTGAGGGAGACAATAGAGAAACTTGAACAGGAGGTGGAGTTGCGAATTGATGAAAGAAATGCTCTTCAGCAAGAAATTTACTGTCTTAAGGAGGAGCTTAATGATTTGAATAAAAAACATGAAGCCATGATGGAGGAAGTCAGGTCAACCGACTTAGACCCACAGAGCTTTGGATCATCCGTGAAAAAATTGCAAGATGAGAACTTAAAGCTGAAGGAAACATGTGAGGCTGACAAAGGAGAGAAAGAAGCTCTTTTGGTTAAATTGGAAGCCATGGAGAAACTTCTAGAGAAAAATACTGTTCTAGAGAATTCCCTTTCAGACTTGAATGCTGAGCTGGACAGTGTCAGAGGAAGGGTAAATGTGTTGGAAGAAACATGTCAATCTCTGCTAGTGGAGAAATCAAATCTTGCTGCTGAGAAGGCCGCCTTGTTTTCTCAGTTACAATCCACAACTGAAAATCTTGAGAAGCTCTCGGAAAAGAGCAACCTATTGGAAAATTCACTATTTGATGTGAATGCTGAACTTGAAGGGTTAAGGGTGAAGTACAAGGCACTGGAAGACACATGCCAGTCACTTGACCATGAGAAATCCAGTATCTTTCAAGAGAAAGAATCCTTAGTGTCACAATTGAACATAACTCATGAAACAGTGAAAGATCTTGAGAAACTGCACAGTGAATTGGAATTAAAGCATTTGGAACTAAAAGGAGAAAGGGAGTCAGCACTTCAAAAGGTAGAGGAGCTGCTAGTTTCCCTATACTCTGAGAGGGAAGAACATTCCAGAGTTTTGAAATTGAATGAAGATGAATTGGCTGAGAAGGAATCACAAATCCATACTCTACAAGAAGATGCAAATTGCAAGGAAAAGGAATATGAAGAGGAACTGGACAGAACTATGCATGCTCAAATTGAAATTTTCATCTTGCAGAAATGTATCAACGATTTGGAGAAAAAGAACTTCTCCCTTTTAGTCGAGTGTCAGAGACTTTTGGAGGCTTCCAAAATGTCTGACAGAATGATATCTAAATTGGAGAGTGAAAATGTTCAAAAGCAGGTTGATGTGAATTCTCTATCTGAGAAAATTAAAATACTAAGGATTGGGCTGATTCAGGTGTTGAAGACTCTTGACATTAACGGTGGGCATTTTCGTGAAGATATGCTTGAAGAAGACCAAATGCTTCTGAACCATATATATGGAAAACTTCAGGAGAGGCAGGAATCTTTTGACACAATTTTCAATGAAAGCCAACAAATGGCCATTGAGAATTCAGTTCTGATTACATTCCTTGAGCAGTTGAAACTAAAGGTAGAAAATCTTGTGACACAAAGAGATGCTCTTGATGAGGAGTTCAGTATCCAGTCTAAGCAGTTCTTGGCCATGCAAGTTGAAGTCCAAAAGATATTGGAGAAGAATCTGGAGTTGAAGTTGACAATAAACAAAGGAGAAGAGAGAATGGAAGTAATGACAACTGAAATAGACAACCTACGGAAGCAGCTGTCAGACCTGGAAAAGAGTCACAACAATTTACAGGAAGATAATTGCAAGATATTGGAAGATAAGTCGTCCTTGATGAGAAGATTTCTAGATCTGGGTGAAGAGAAAAGTAACTTGGAAGAAGAAATATGTGTCATGATCCATGAGATAATATCTCAATCTAATAGTTCACTGATTTACCAGAATATTATCTTTGAGAAGCACTTGGAACTTAAAGAGCTAGGTGATAATCTTGATAAACATTGTTCAGAAAATAATGACCTTGAGGAGAGATTGAAAGTAATGGTGTGCAAATTAGAAAATGCAGAAATGGAAAATTCACATCTTAAAGAGTCATTTATAAAGTCAAATGTTGAACTAAATTTAGTTGAATCCATCAATCATCAATTGAGTTGCCAGATTAGCGATGAAAGGGAAATGTTGCATCAAAAGGAAAATGAGCTTTTGGAAGCAGCTGAGATGTTTCGTGTTTTACATACTGAGAAAACAGAATTGCAAAGAATGGTGGAAGATCTGAAGATTAAATATGATGAAGCCATGGTGACGCTCAAAGAACAGGCTAATCAAATTTTAACATTGTCCTCAGACAAGGATCGTCAAAATGAAGAGCTCACATGCCTGTGTGAAGTGAATCAGAAGTTGGAGTCTGAAATGGGGAACCTGCGTCAGGAGCTTGGAGAAACTCAACTCAGGGAAAAGAAGCTAAGCTATGAAGTACTTAAGGGAATAAATGAGATTGAACAATGGGAAACTCAGGCTTCAACACTCTTTGCTGAACTTCAGATTTCTGCTGTCAATGAAACCTTATTTGAAGGAAAGGTCCGTGAGCTAGCTGATGCATGTAAGAATCTTGAACGCAGAAACTACTCCCAAGACAGGGAAAGTGAACAGATGAAAGAGAGAGTTAGCAAGCTGGAAGTTGAAAATGGAAGACTCTGTGATCAATTAGCTGCTTATGTCCTTGCTGTTGGTGCTTTGAATGATTGTATAACATCTTTGGAGATGCAGACTCTCGCACATGCAAAACCTCATGACTGTGAAGAATCAAAGGTTAAAGATTTGGTGAATAATGAATACTCTGAAAATGGTCATCAAACAGATGAAGATCAGACTGTTATGGCACCGGATGCACTCCCTGACTTCCAAAACATGCAGAGAAGGATCAATGCAATTGCAATGGCGGTTAAGCAGTTAAGTGAAAGTTTCAAACCCAAGAATGAAACGAGAGAGATTCAAGCAAGCAAGCATGTTACTCAAGCAAGGCCAGATATCCCCATTACCGAGATTGAAGTCCTGCCAAAAGACATCATGCTTGATCAAATATCTGAAAGTTCATCGTATGGGATAAGTAAGAGGAGAGAAATTCTTGAGGCTGATGATCAGATGCTAGAGTTGTGGGAAACAGCTAATAAGGATGCTACTGTTGGCATGCAAATTGAAAAGACACAGAAGATGGCTGCTGAAGCTGCTGCCAATCATCAAAGAGGAGCAACCAAGGAAGTCAAAAACACATCAAATTTTTTtataattgtagATTCTACCGTGGAAAAGGAGTTGAGTGTGGACAAGTTAGAGATCTCAAGAAGATTGACACTACCGCGCGAAGAAGGGAACCAGAGCAAGATTTTAGAAAGACTTGATTCTGATGCACAGAAGTTGACCAACCTTCAAATCACCACACAAGATTTGATGAAGAAGATAGAAATTAATGAGAAGAACGCAAAGGGAAAAGGTGGTGAGTGTGATGAGGTGAAAAGGCAGCTTCAAGCAGCTCAGGATACCATCACAAAGTTGCTTGATGTCAACCGCAAGTTGATGAAGAATGTGGAAGAGGGTTCCTTGTCTTCTGTTGGGAAGGGTGAAGCAGAGTCAGATGGAAGTGGAAGTGTCAGCAGAAGTAGAGTTTCAGAACAGGCACGGAGAGAATCAGAAAAAATAGGACAACTGCATTTGGAGGTGCAAAGACTGCAGTTTCTGCTGCTGAAACTGGGTGATGGAAAAGAAAGCAAAGAAATAACAAAAGTTGCTGACAGAAATCCAAGAGTGCTTTTGCGAGATTATCTCTATGGTGGGACAAAAGCCTACAAGAAGAAGAAAAGGCTACCCTTTTGTGCATGTATGCGACCTTCCACCAGGGGAGATTAA 5415 0.3983 MAHLSQANSRRMYSWWWDSHISPKNSKWLQENLTDMDVKVKQMIKLIEEDADSFARRAEMYYKKRPELMKMVEEFYRAYRALAERYDHATGVIRHAHKTMTEAFPNQVPMMLTDDLPTEPLTPDMRHPSRAFLDPDEPQKDASARLHAIKRNGAYSGEPDSAMNKTGLKQLNDLYVPGEPENHTKFVEGHARRGLSFFEMQEESSDLNNGSNITGSQVLSESERMTKAETEILALKKAIAKLEEEKEAGLLQYQQSLEKLSNLESEVSSAQANSQRLDERASKAEAEVQASKEALIKLQAESEACLLQYQECLEKISNLEKNISSAQKEAGELNDRATTAENETESLKQELARVEAEKEATLVQYKECLETISKLEERLAEAEENARRIKDHANITENEIEALKLEVTKLNEEKEDAAIRYQQCLEIISSLEYKLSCAEEEVRRLKSKIDDEVQKLQSSEQKCLLLETSNHSMQSELQSLAQKMESNNEEINEKQKELNRLWGCIQEERLRFIEAETAFQTLQQLHSQSQEELRSLAADFHSKVEILGNVESRKQALEDEVLRVTEENKILNEVKISSSLSIKNLQEEILNLRETIEKLEQEVELRIDERNALQQEIYCLKEELNDLNKKHEAMMEEVRSTDLDPQSFGSSVKKLQDENLKLKETCEADKGEKEALLVKLEAMEKLLEKNTVLENSLSDLNAELDSVRGRVNVLEETCQSLLVEKSNLAAEKAALFSQLQSTTENLEKLSEKSNLLENSLFDVNAELEGLRVKYKALEDTCQSLDHEKSSIFQEKESLVSQLNITHETVKDLEKLHSELELKHLELKGERESALQKVEELLVSLYSEREEHSRVLKLNEDELAEKESQIHTLQEDANCKEKEYEEELDRTMHAQIEIFILQKCINDLEKKNFSLLVECQRLLEASKMSDRMISKLESENVQKQVDVNSLSEKIKILRIGLIQVLKTLDINGGHFREDMLEEDQMLLNHIYGKLQERQESFDTIFNESQQMAIENSVLITFLEQLKLKVENLVTQRDALDEEFSIQSKQFLAMQVEVQKILEKNLELKLTINKGEERMEVMTTEIDNLRKQLSDLEKSHNNLQEDNCKILEDKSSLMRRFLDLGEEKSNLEEEICVMIHEIISQSNSSLIYQNIIFEKHLELKELGDNLDKHCSENNDLEERLKVMVCKLENAEMENSHLKESFIKSNVELNLVESINHQLSCQISDEREMLHQKENELLEAAEMFRVLHTEKTELQRMVEDLKIKYDEAMVTLKEQANQILTLSSDKDRQNEELTCLCEVNQKLESEMGNLRQELGETQLREKKLSYEVLKGINEIEQWETQASTLFAELQISAVNETLFEGKVRELADACKNLERRNYSQDRESEQMKERVSKLEVENGRLCDQLAAYVLAVGALNDCITSLEMQTLAHAKPHDCEESKVKDLVNNEYSENGHQTDEDQTVMAPDALPDFQNMQRRINAIAMAVKQLSESFKPKNETREIQASKHVTQARPDIPITEIEVLPKDIMLDQISESSSYGISKRREILEADDQMLELWETANKDATVGMQIEKTQKMAAEAAANHQRGATKEVKNTSNFFIIVDSTVEKELSVDKLEISRRLTLPREEGNQSKILERLDSDAQKLTNLQITTQDLMKKIEINEKNAKGKGGECDEVKRQLQAAQDTITKLLDVNRKLMKNVEEGSLSSVGKGEAESDGSGSVSRSRVSEQARRESEKIGQLHLEVQRLQFLLLKLGDGKESKEITKVADRNPRVLLRDYLYGGTKAYKKKKRLPFCACMRPSTRGD 1804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01111 1804 Coils Coil 547 574 - -
Cca02g01111 1804 Coils Coil 809 829 - -
Cca02g01111 1804 Coils Coil 225 301 - -
Cca02g01111 1804 Coils Coil 848 889 - -
Cca02g01111 1804 Coils Coil 1161 1195 - -
Cca02g01111 1804 Coils Coil 470 501 - -
Cca02g01111 1804 PANTHER PROTEIN NETWORKED 4A 1 1804 - -
Cca02g01111 1804 Coils Coil 652 672 - -
Cca02g01111 1804 Coils Coil 1021 1041 - -
Cca02g01111 1804 Coils Coil 309 420 - -
Cca02g01111 1804 Coils Coil 1371 1391 - -
Cca02g01111 1804 MobiDBLite consensus disorder prediction 1702 1734 - -
Cca02g01111 1804 Coils Coil 1070 1104 - -
Cca02g01111 1804 Coils Coil 1112 1132 - -
Cca02g01111 1804 MobiDBLite consensus disorder prediction 1710 1724 - -
Cca02g01111 1804 Coils Coil 1252 1321 - -
Cca02g01111 1804 MobiDBLite consensus disorder prediction 203 222 - -
Cca02g01111 1804 Coils Coil 428 462 - -
Cca02g01111 1804 SUPERFAMILY Tropomyosin 221 415 - -
Cca02g01111 1804 Coils Coil 932 952 - -
Cca02g01111 1804 Coils Coil 1217 1244 - -
Cca02g01111 1804 Coils Coil 683 787 - -
Cca02g01111 1804 Coils Coil 1671 1698 - -
Cca02g01111 1804 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 13 93 IPR011684 GO:0003779
Cca02g01111 1804 PANTHER KINASE INTERACTING (KIP1-LIKE) FAMILY PROTEIN 1 1804 - -
Cca02g01111 1804 Pfam KIP1-like protein 14 87 IPR011684 GO:0003779
Cca02g01111 1804 Gene3D - 682 857 - -
Cca02g01111 1804 Gene3D - 219 397 - -
Cca02g01111 1804 Coils Coil 582 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01111 Cca-Chr2 28399664 28407148 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01111 - - gmx:100782563 2331.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01111 02 28399664 28407148 Cca02g01111 02 28399664 28407148 ECH
Cca03g02146 03 42004624 42011704 Cca02g01111 02 28399664 28407148 PCT