Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02140 ATGGCACCTAGAAGGACTGAAATTCTTGTGATCATGTCCCTTGTGATGGCCCTTTGGGGTGTTACTTCCACATTGGCTCAATCCCAATCAAATTGCATCAATGTGTTCATAAGTCTTTCTCCATGCCTTGACTATGTTACAGGAAATGCCTCTACCCCTTCCTCTTCTTGTTGCTCTCAACTTTCCCTTGTGGTGAGGTCACAGCCAATGTGCTTATGTGAGGTTGTTAACGGTGGTGCCTCATCTATTGCTGCAAGTTTCAACATCAATCAGACTCGGGCTTTGGCACTTCCTACTTCTTGCAACGTTCAGACACCTCCTCTTAGCACCTGTAGCAGCTCAGCTTCTTCCTCATCAGGTGTTTCTGTTTCGAATTTTCCGAATTCCCCTTCAGGTATTGGATCAAACACTGTTTCATCAACAACCGGAAGCAGTAGAAGTGTCGGTGGCTCATCTTATGGAAATTCAAGTTCCACTAAATTCCCATGTTCTTTGGTTGTCATGTTTGTCCTTGCAACGACTTTGACTTTCACCTTCAAGACCTAG 546 0.4469 MAPRRTEILVIMSLVMALWGVTSTLAQSQSNCINVFISLSPCLDYVTGNASTPSSSCCSQLSLVVRSQPMCLCEVVNGGASSIAASFNINQTRALALPTSCNVQTPPLSTCSSSASSSSGVSVSNFPNSPSGIGSNTVSSTTGSSRSVGGSSYGNSSSTKFPCSLVVMFVLATTLTFTFKT 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02140 181 Pfam Probable lipid transfer 21 111 IPR016140 -
Cca03g02140 181 MobiDBLite consensus disorder prediction 132 158 - -
Cca03g02140 181 CDD AAI_LTSS 39 103 - -
Cca03g02140 181 PANTHER LIPID TRANSFER PROTEIN 7 180 - -
Cca03g02140 181 PRINTS Plant phospholipid transfer protein signature 31 47 IPR000528 GO:0006869|GO:0008289
Cca03g02140 181 PRINTS Plant phospholipid transfer protein signature 52 66 IPR000528 GO:0006869|GO:0008289
Cca03g02140 181 PRINTS Plant phospholipid transfer protein signature 88 105 IPR000528 GO:0006869|GO:0008289
Cca03g02140 181 Gene3D - 29 111 IPR036312 -
Cca03g02140 181 SMART aai_6 32 111 IPR016140 -
Cca03g02140 181 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 7 180 IPR043325 -
Cca03g02140 181 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 31 114 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02140 Cca-Chr3 41943444 41945318 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02140 9 169 Lipid Metabolism Gene Families AT3G22600 44.512 6.01e-36 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02140 - - gmx:100789510 235.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02140 03 41943444 41945318 Cca03g02140 03 41943444 41945318 ECH
Cca02g01120 02 28503389 28504744 Cca03g02140 03 41943444 41945318 PCT