Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01120 ATGACTTTTAGAGGGTTTGTCTTGTGTCTAATTGTGGTCATGGTGGCCACTATGTGGACTCAAAATGCAGCTCAATCAGGTTGTACTAATGCACTCACTAGTTTGAGCCCTTGTCTGAACTACATAATGGGAAGTTCATCAACTCCATCAGCTTCATGCTGCTCACAACTCTCAAGTGTAGTCCAATCTTCACCACAATGTCTTTGCTCCGTGCTTAATGGTGGGGGTTCCACTTTTGGAATAACCATAAATCAAACTCTTGCTTTGTCTCTCCCCGGTGCTTGTAAAGTGCAAACCCCCCCTGTTAGTCAGTGCCAAGCTGGCAATGGAGCAACATCTCCTTGGGCTGCTCCAGTTGGTTCTCCATCAGATTCTTCAGCTGAATCACCTCAAGCCTCAATTACGCCTTCTGCTTCAGACTTTCCCTCAGGTGCAGGATCTAAAACTGTGCCATCAACAGACAGTGGTTTATCATCTGATGGAAACGCTATTAAAGTCCCTTCCTACTTGGTGCTCTATCTTCTTATTACCATTGTGTCTTGTGGCTTAACCTTCACCATGTTCTGA 567 0.4515 MTFRGFVLCLIVVMVATMWTQNAAQSGCTNALTSLSPCLNYIMGSSSTPSASCCSQLSSVVQSSPQCLCSVLNGGGSTFGITINQTLALSLPGACKVQTPPVSQCQAGNGATSPWAAPVGSPSDSSAESPQASITPSASDFPSGAGSKTVPSTDSGLSSDGNAIKVPSYLVLYLLITIVSCGLTFTMF 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01120 188 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 27 106 IPR036312 -
Cca02g01120 188 Gene3D - 25 105 IPR036312 -
Cca02g01120 188 PRINTS Plant phospholipid transfer protein signature 27 43 IPR000528 GO:0006869|GO:0008289
Cca02g01120 188 PRINTS Plant phospholipid transfer protein signature 48 62 IPR000528 GO:0006869|GO:0008289
Cca02g01120 188 PRINTS Plant phospholipid transfer protein signature 82 99 IPR000528 GO:0006869|GO:0008289
Cca02g01120 188 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 6 183 - -
Cca02g01120 188 SMART aai_6 28 105 IPR016140 -
Cca02g01120 188 Pfam Probable lipid transfer 12 105 IPR016140 -
Cca02g01120 188 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 6 183 IPR043325 -
Cca02g01120 188 MobiDBLite consensus disorder prediction 106 158 - -
Cca02g01120 188 CDD AAI_LTSS 35 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01120 Cca-Chr2 28503389 28504744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01120 6 174 Lipid Metabolism Gene Families AT3G22600 52.047 8.19e-44 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01120 - - gmx:100306151 287.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01120 02 28503389 28504744 Cca02g01120 02 28503389 28504744 ECH
Cca02g01120 02 28503389 28504744 Cca03g02140 03 41943444 41945318 PCT