Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02115 ATGGACCTTAGCAAAGTCACGTTGGAGATCTTCTCCAAACTGGAGCAACAATGGCTCTCTCACTACGAAGCCACCGCCAAAACCCGCATTCTCAGCATTGACGGCGGAGGAACCACCGCCATTGTCGCCGGCGCCGCCCTCCTCCACCTCCAGAACCAGATCCGCGCCCAAACCTCCGATCCCCACGCGCAAATCGCCGATTACTTCGACATCATCGCCGGAACCGGCATTGGCGCGCTCCTCGCCGCCATGATCACCGCCGACGACGGCTTCGGCCGCCCTCTCTACACCGCCGGAGACGCCGTCCACTTCATCGCCGAAAACAACCGCGAACTCTACAAGGCGAAGGGCGGCGGCGTGTTCCGCCGCCGCCGGAGATTCTCCGCGAGGAGCATGGAAAAAGCGCTGAAGCGAGTGTTCCGGCGAAAAGAGGAAGAAGGACGGTTGTTGACTCTGAAGGACACGTGTAAGCCTCTGCTTATCCCTTGCTTTGACCTCAAGAGCTCTGCGCCATTCGTGTTCTCGCGAGCCGACGCGTCCGAGTCACCGAGTTTCAACTTCGAGCTTTGGAAGGCATGCCGCGCCACGTCAGCAACGCCTGGCCTCTTCGAGCCCTTCCACTTCGCCTCCGTCGACGGGAAAACCTCCTGCGCCGCCGTCGACGGTGGTCTGGTGATGAACAATCCGGCAGCGGCGGCCGTGACGCACGTCCTCCACAACAAGCGCGACTTCCCCTCGGTGAACGGCGTGGAGGATCTCCTCGTCCTCTCCATCGGAAACGGAGCGCAGGCGAAGAGAGTGAACAGCGTCGGCGAATGCTCCACTTCGGCGGTGGTTGACATTGCTCTCGACGGCGTTTCCGAGACCGTTGACCAGATGTTAGGAAACGCCTTCTGTTGGAACCGTACGGACTATGTCAGGATTCAGGCCTTTGGTTTGGAGGGAGAAGGAACGCAAGCGGAGGAAAAGAAAGTGCTGAACGAAAGAGTGCTGGAATCGTTACCGTTTGGTGGGAAACGATTACTGCAGGAAACTAACGGTAACAGAATCGAGAGCTTTGTGCAACGTCTTGTTGCTACCGGGAAAACAAGTCTGCCACCTAGTCCCTGCAAGGTTCCGCTGTGA 1125 0.5884 MDLSKVTLEIFSKLEQQWLSHYEATAKTRILSIDGGGTTAIVAGAALLHLQNQIRAQTSDPHAQIADYFDIIAGTGIGALLAAMITADDGFGRPLYTAGDAVHFIAENNRELYKAKGGGVFRRRRRFSARSMEKALKRVFRRKEEEGRLLTLKDTCKPLLIPCFDLKSSAPFVFSRADASESPSFNFELWKACRATSATPGLFEPFHFASVDGKTSCAAVDGGLVMNNPAAAAVTHVLHNKRDFPSVNGVEDLLVLSIGNGAQAKRVNSVGECSTSAVVDIALDGVSETVDQMLGNAFCWNRTDYVRIQAFGLEGEGTQAEEKKVLNERVLESLPFGGKRLLQETNGNRIESFVQRLVATGKTSLPPSPCKVPL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02115 374 PANTHER PATATIN-LIKE PROTEIN 6 2 373 - -
Cca03g02115 374 Pfam Patatin-like phospholipase 31 233 IPR002641 GO:0006629
Cca03g02115 374 SUPERFAMILY FabD/lysophospholipase-like 27 315 IPR016035 -
Cca03g02115 374 CDD Pat17_PNPLA8_PNPLA9_like 30 327 - -
Cca03g02115 374 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 31 234 IPR002641 GO:0006629
Cca03g02115 374 PANTHER PATATIN 2 373 - -
Cca03g02115 374 Gene3D Cytosolic phospholipase A2 catalytic domain 18 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02115 Cca-Chr3 41505753 41507342 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02115 1 371 Acyl Lipid Metabolism Gene Families AT3G63200 70.027 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02115 - - gmx:100784729 645.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02115 03 41505753 41507342 Cca03g02115 03 41505753 41507342 ECH
Cca03g02115 03 41505753 41507342 Cca02g01135 02 28683274 28684803 PCT