Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01135 ATGGACCTCAGTAAACTCACCCTACAGATCTTCTCCAACCTCGAGCACAAATGGCTCTCACATTGTAAAGCCCCCAACAAAACCCGCATTCTCAGCATTGACGGCGGAGGAACCACCGCCATTGTCGCCGGACAAGCTCTCCTCCGCCTCCAGGATCAGATCCGTCTCCACACCTCCGATCCCCACGCTCAGGTCGCCCATTTCTTCGACATCGTCGCCGGCACCGGCATTGGCGCCATCCTCGCCGCCATGATCACCGCCGCCGACGCCTTCGGCAGGCCGCTCTACACCGCCACCGAAGCCGTCCGTCTCGTCTCCGAGAGGAACTCCGAACTCTACAAGCTCAAATCCGGCGGCGTCTTCCGCCGCCGCCGGAGATTCTCTTCCCGGAGCATGGACAATGTGCTGAAGCAAGTGTTCCAGAGGAAGGAGGACGGACGGTTGTTGACCTTGAAGGACACGTGTAAACCGCTGCTTATTCCTTGCTTCGACCTCAAGAGTTCCGCGCCGTTCGTGTTTTCACGAGCCGACGCGTCGGAATCTCCGAGCTTCGACTTCGAGCTCTGGAAGGTGTGCCGCGCCACGTCGGCAACGCCGAGCCATTTCAAGCCGTTCGACTTCGCCTCCGTGGACGGCAAGACGTCGTGCTCCGCCGTGGACGGCGGTCTCGTGATGAACAACCCTACGGCGGCGGCCGTGACGCACGTTCTCCACAACAAGCGCGATTTCCCGGCGGTGAACGGCGTGGAGGATCTCCTGGTGCTTTCCTTGGGGAACGGTTCCTCGGGCGCGAAAGCGTGCGAGAGTGGCACGTGCTCGACGCCGTCGGTGGTTGACATTGTGCTGGACGGTGTTTCCGAGACCATTGACCAGATGCTAGGGAACGCCTTCTGCTGGAACCGTACCGATTACGTCAGAATCCAGGCGTTCGGTTTGGCAATGAGGCAGGAGGAGGTGCTGAAAGAGAGGGGATTGGAGTCGTTACCGTTTGGCGGGAAGCGGTTACTGACGGAGACTAACGGAAACAGAATAGATAGCTTCGCGCAACGTCTTGTTGCTACCGGAAAACCAAGCCCGCCGTCTAGTCCCTGCAAGGATTCCGCCGTCAACCCACTCGCTAACGGCCGCTAG 1131 0.5986 MDLSKLTLQIFSNLEHKWLSHCKAPNKTRILSIDGGGTTAIVAGQALLRLQDQIRLHTSDPHAQVAHFFDIVAGTGIGAILAAMITAADAFGRPLYTATEAVRLVSERNSELYKLKSGGVFRRRRRFSSRSMDNVLKQVFQRKEDGRLLTLKDTCKPLLIPCFDLKSSAPFVFSRADASESPSFDFELWKVCRATSATPSHFKPFDFASVDGKTSCSAVDGGLVMNNPTAAAVTHVLHNKRDFPAVNGVEDLLVLSLGNGSSGAKACESGTCSTPSVVDIVLDGVSETIDQMLGNAFCWNRTDYVRIQAFGLAMRQEEVLKERGLESLPFGGKRLLTETNGNRIDSFAQRLVATGKPSPPSSPCKDSAVNPLANGR 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01135 376 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 31 233 IPR002641 GO:0006629
Cca02g01135 376 Gene3D Cytosolic phospholipase A2 catalytic domain 16 357 - -
Cca02g01135 376 SUPERFAMILY FabD/lysophospholipase-like 26 310 IPR016035 -
Cca02g01135 376 CDD Pat17_PNPLA8_PNPLA9_like 30 309 - -
Cca02g01135 376 MobiDBLite consensus disorder prediction 354 376 - -
Cca02g01135 376 PANTHER INACTIVE PATATIN-LIKE PROTEIN 9-RELATED 1 376 - -
Cca02g01135 376 Pfam Patatin-like phospholipase 31 232 IPR002641 GO:0006629
Cca02g01135 376 PANTHER PATATIN-LIKE PROTEIN 6 1 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01135 Cca-Chr2 28683274 28684803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01135 1 376 Acyl Lipid Metabolism Gene Families AT3G63200 71.279 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01135 - - gmx:100777557 652.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01135 02 28683274 28684803 Cca02g01135 02 28683274 28684803 ECH
Cca03g02115 03 41505753 41507342 Cca02g01135 02 28683274 28684803 PCT