Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02106 ATGGCGAATGGCTCCAGCTTCGCCGGTCGCAGTGGAGTTCGAGTGGTGGTCGCCGGTGACCGAGCCACCGGAAAATCAACCCTCATAGCTGCCATAGCCACGGAGTCATTCGCCGAGGCCGTTCCGCCGGTTCTTCCGCCCACTCTCTTACCCCCCGATTTGTACCCGGACAACGTTCCTCTCACCGTCATTGACACGCCGTCAAGCTTGGACAAACAGAGCAAGCGTAACGAGGAATTGAAAGGAGCTGATGTCGTCGTTTTAACTTATGCTTGCAATGACACCGCGTCGTTTTCGCGGTTGAGTTCTTACTGGTTCGGGGAGCTGCAGAAGTTGGAGGTTAAGGTACCTGTAGTTGTGGTTGGTTGCAAGCTGGATCTAAGAGATGAAAGCCAGCAAGTGAGCTTGGAGCGCCTCATGACCCAGCTTCTGCAACAGTTCAAGGAGATTGTCACCTGCATTGAATGCTCTGCTGCCACGCAATACCAGGTCCCTGAAGTTTTTTATTTTGCTCAAAAAGTGGTACTGCATCCAGTAGATCCATTGTATGATCATGAAAATCAAGCTTTAAAGGATCGATGTGTTAGGGCATTGAGAAGAATATTTGTTCTTTGTGACCGTGACATGGATGATGCCCTCAATGATGCTGAACTAAATGAGTTTCAGGTTAGATGTTTCAATGCACCATTGCAATCATCTGAAATAGCAGGAATCAAAACAGTTGTACAGCAGAAAGTACCTGAAGGAGTCAACTCACTTGGTCTTACTTTTCCAGGATTTCTTTCTATCCATAATATGTTCCTTAAAAAAGGGCGTCAAGAGACATTATGGGCTGTTCTAAGAAACTTTGGATATGATAATAATTTGAAACTCAGGAGTGATTTCCTTCCTGTTCCATCTAAGCGTGCTTTGGATCAGAGTGTGGAGCTGACTGGTGAAGCTATAGAGTTTCTAAATGGTATCTTTCGATTGTTAGATACAGATAAAGATCGTGCCCTACGACCTGCTGAAGTTGATAAGTTATTTTGTACTGCTCCAGAAAGTCCATGGAATGATGCTCCATATAAGGATGCTGCTGAGAGAACTGACTCGGGTTACATATCTCTTAATGGATTCCAATCACAGTGGGCCCTTATGACATTACTTGACCCACCATGTAGCCTGGTTAATTTGATTTATATTGGGTATAGTGGTAATCCTGCTGCAGCTCTTCGTGTTACTCGAAGAAGAGCAATTGATCGCAAGAAGCAAACAACAGAAAGAAATGTGGTCCAATGCTATGTTTTTGGTTCCAAAAATTCTGGGAAGTCTGCTCTGTTGGATTCATTATTGGGGAGGCCTTTCTCAAACAATTATACTCCAACAACAGTTGAGAGGTTTGCAGCAAATGCTATTGAGTTAATAGGGGGAACCAGAAAAACTCTCGTGTTGCGGGAGATACCAGAGAGTGAAGTATCAAATGTTTTGTCAAATCAGGATTATTTGGCAGCATGTGATGTAGCTGTTTTTGTGTATGACAGCTCAGATGAACATTCATGGAAGAAATCCAGAGATTTGCTTGAGAAGGTTGCTAGACAGGGAGATCTAACTGGTTATAGAGTTCCGTGTCTACTTATTGCTGCTAAGGATGATTTAACTCCATACCCAAGAGCAGTACAAGATTCAGTTAAGGTTACTCAGGAGTTGGGGATAGAGGCACCTTTTCATGTAAGTATGAAATTAGGCGATTCAAGTAACGTGTACAATAAGATTATCCATGCTGCAGAGCACCCTCATTTAAGCATTCCAGAAACTGATATTGGAAGGAAAAGAAAGCAATACCATCGGCTTCTTCAGCACTCTCTTGTTTTTGCCTCAGTTGGGACTGCTATGGCAGTTGTTGGTTTGGCAGCATGCCGTGCATATGCTGTGAAGAAGAATTCTTCTGGTTAG 1932 0.4384 MANGSSFAGRSGVRVVVAGDRATGKSTLIAAIATESFAEAVPPVLPPTLLPPDLYPDNVPLTVIDTPSSLDKQSKRNEELKGADVVVLTYACNDTASFSRLSSYWFGELQKLEVKVPVVVVGCKLDLRDESQQVSLERLMTQLLQQFKEIVTCIECSAATQYQVPEVFYFAQKVVLHPVDPLYDHENQALKDRCVRALRRIFVLCDRDMDDALNDAELNEFQVRCFNAPLQSSEIAGIKTVVQQKVPEGVNSLGLTFPGFLSIHNMFLKKGRQETLWAVLRNFGYDNNLKLRSDFLPVPSKRALDQSVELTGEAIEFLNGIFRLLDTDKDRALRPAEVDKLFCTAPESPWNDAPYKDAAERTDSGYISLNGFQSQWALMTLLDPPCSLVNLIYIGYSGNPAAALRVTRRRAIDRKKQTTERNVVQCYVFGSKNSGKSALLDSLLGRPFSNNYTPTTVERFAANAIELIGGTRKTLVLREIPESEVSNVLSNQDYLAACDVAVFVYDSSDEHSWKKSRDLLEKVARQGDLTGYRVPCLLIAAKDDLTPYPRAVQDSVKVTQELGIEAPFHVSMKLGDSSNVYNKIIHAAEHPHLSIPETDIGRKRKQYHRLLQHSLVFASVGTAMAVVGLAACRAYAVKKNSSG 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02106 643 Pfam EF hand associated 350 417 IPR013566 -
Cca03g02106 643 SMART rab_sub_5 13 178 - -
Cca03g02106 643 SMART ras_sub_4 14 178 - -
Cca03g02106 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 210 IPR027417 -
Cca03g02106 643 ProSitePatterns EF-hand calcium-binding domain. 206 218 IPR018247 -
Cca03g02106 643 Gene3D - 487 588 IPR027417 -
Cca03g02106 643 PRINTS Transforming protein P21 ras signature 13 34 - -
Cca03g02106 643 PRINTS Transforming protein P21 ras signature 114 127 - -
Cca03g02106 643 PRINTS Transforming protein P21 ras signature 153 175 - -
Cca03g02106 643 ProSiteProfiles Miro domain profile. 10 177 IPR020860 GO:0003924|GO:0005525
Cca03g02106 643 Gene3D - 291 481 - -
Cca03g02106 643 Pfam EF hand associated 229 312 IPR013567 -
Cca03g02106 643 PANTHER RHO FAMILY GTPASE 1 492 IPR003578 GO:0005525|GO:0007264
Cca03g02106 643 CDD Miro2 420 599 - -
Cca03g02106 643 Gene3D - 185 289 - -
Cca03g02106 643 SUPERFAMILY EF-hand 181 377 IPR011992 -
Cca03g02106 643 PANTHER MITOCHONDRIAL RHO GTPASE 1 492 - -
Cca03g02106 643 SMART rho_sub_3 15 178 IPR001806 GO:0003924|GO:0005525
Cca03g02106 643 PIRSF Miro 9 643 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0007005|GO:0031307
Cca03g02106 643 Gene3D - 8 180 IPR027417 -
Cca03g02106 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 595 IPR027417 -
Cca03g02106 643 Pfam Ras family 428 553 IPR001806 GO:0003924|GO:0005525
Cca03g02106 643 Pfam Ras family 14 175 IPR001806 GO:0003924|GO:0005525
Cca03g02106 643 ProSiteProfiles Miro domain profile. 421 590 IPR020860 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02106 Cca-Chr3 41373212 41382367 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02106 1 641 EF-hand Containing Proteins AT3G63150 57.878 0.0 798
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02106 K07870 - gmx:100803790 1135.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02106 03 41373212 41382367 Cca02g01140 02 28794159 28808978 PCT