Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02079 ATGGCGGCTGTCCCACCATCGCGGACCGATCCACCGGCAATGGTGCCGCCGCCGCTCATCGTCTCCGACTCCTTCGCCAAGGACGCCATTCTCGCCTGGTTCCGCGGCGAGTTCGCCGCCGCCAACGCCATCATCGACGCCCTATGCGGACACCTCGCGCACCTCGCCGCCGCCTCCTCCGACTACGACGACACCTTCGCCGCCATCCACCGCCGCCGCCTCAACTGGATCCCCGTCATCCATATGCAGAAGTATCACTCCATCGCTGACGTCGCTCTCGAGCTGCGCAGAGTCGCCGAGAGGAAAACGGAGGTCGAAGGCGCCAAGAAAAGCGACGACGAGGAAGGCAAATTCGAGAAGGAAACGGCGGAGAGTGGCGGAAACGAAGGTGACGAAGCTGCGCCGGAGTATGATTCGCCGGACAGTGAGATTACTGATTCAGGATCTCAGGAAATGCAACCAAGTGCGATAAACAATAATATATGTTCCAAACATGAAGAATGTGAAGGACGTTCTTCACAAATAAAGCTGACAAAAGGTTTCACAGCAAAAGAGTCCGTGAAGGGGCATATGGTGAATGTTGTGAAAGGATTGAAGTTGTATGAGGACGTTTTTTCTGAATCAGAAATCTTCAAGCTGACCGATTTTGTGAATGAGATTCATGCTGCTGGCCAGAACGGGGAACTCTCAGGTGAAACTTTTATACTATTCAACAAACAGATGAAAGGAAACAAGAGAGAGCTGATTCAGTTCGGTGTTCCGATATTTGGACAGATAAAGGACGATACCAAAAGTAATATAGAGCCAATTCCAGCACTTCTCCAAGATGTTATTGATCACCTTATTCAATGGAAATTAATTCCAGAGTACAAAAGGCCAAACGGTTGTATCATTAACTTTTTTGAAGAGGGGGAATTTTCTCAGCCATTCCTGAAACCACCGCATTTGGACCAACCTCTATCCACCCTTCTTCTCTCTGAATCAACTATGGCTTTTGGGCGTATCCTTATGAGTGAAACTGATGGAAACTACAAGGGGCCGCTCATGCTCTCATTGAAGGAAGGGTCTCTTTTAGTGATGAGAGGAAACAGTGCTGACATGGCAAGGAACGTAATGTGTCCATCCCCTAACAAAAGGGTGAGCATCACCTTCTTCAGACTGAGGCCAGACTCCAATCAATGTCAACCACTAAGTCCTACCATGACAACTGCAATGAACCTTTGGCAACCTGGCATTGCTAGCCCATATACTTTGCCGAATGGAGCTCTAAGTGGCTATGATGAGGCTATGGATATGATGCCCAAATGGGGATTAGTTGGTGCTCCAATGGTCATGTTAACCCCTATGCGCCCTATGGCAGTGAACACTCGTAAACTTCCTCAAGGTGGGACTGGGGTTTTCTTGCCTTGGAAGGGGGCATCCAGAAAACACGCAAGGCATCTTCCACCGCGTGCCCAAAAAGGACGCCTTATGGCATTACCTTCACCAGTCGAGTCACACATGGGAGAGTCCACTTCTGAACCCAGCATTGCTGTTGTTGAAGGATAA 1548 0.4961 MAAVPPSRTDPPAMVPPPLIVSDSFAKDAILAWFRGEFAAANAIIDALCGHLAHLAAASSDYDDTFAAIHRRRLNWIPVIHMQKYHSIADVALELRRVAERKTEVEGAKKSDDEEGKFEKETAESGGNEGDEAAPEYDSPDSEITDSGSQEMQPSAINNNICSKHEECEGRSSQIKLTKGFTAKESVKGHMVNVVKGLKLYEDVFSESEIFKLTDFVNEIHAAGQNGELSGETFILFNKQMKGNKRELIQFGVPIFGQIKDDTKSNIEPIPALLQDVIDHLIQWKLIPEYKRPNGCIINFFEEGEFSQPFLKPPHLDQPLSTLLLSESTMAFGRILMSETDGNYKGPLMLSLKEGSLLVMRGNSADMARNVMCPSPNKRVSITFFRLRPDSNQCQPLSPTMTTAMNLWQPGIASPYTLPNGALSGYDEAMDMMPKWGLVGAPMVMLTPMRPMAVNTRKLPQGGTGVFLPWKGASRKHARHLPPRAQKGRLMALPSPVESHMGESTSEPSIAVVEG 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02079 515 MobiDBLite consensus disorder prediction 102 155 - -
Cca03g02079 515 PANTHER 2OG-FE(II) OXYGENASE FAMILY OXIDOREDUCTASE 3 513 - -
Cca03g02079 515 MobiDBLite consensus disorder prediction 496 515 - -
Cca03g02079 515 MobiDBLite consensus disorder prediction 102 127 - -
Cca03g02079 515 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 3 513 IPR044842 GO:0003729|GO:0006402|GO:0032451
Cca03g02079 515 Gene3D - 181 395 IPR037151 -
Cca03g02079 515 SUPERFAMILY Clavaminate synthase-like 188 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02079 Cca-Chr3 41035840 41043511 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02079 K10767 - gmx:100796344 897.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02079 03 41035840 41043511 Cca03g02079 03 41035840 41043511 ECH
Cca03g02079 03 41035840 41043511 Cca02g01165 02 29150049 29156136 PCT