Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01165 ATGGCGGCTGGCCCAACACCACCACCCTCTGATCGACCCACCCTCCTCCCTCCCCCAATGCTCGTCTCTGACTCCTTCGCCAAGGACGCCATCCTCGCCTGGTTCCGCGGCGAGTTTGCCGCCGCCAACGCCATCATCGACGCcctctgcgcccacctcgcctccgactccccctccgcctccgcctcagactatgacgccgtcttcgcggccatccaccgccgcaggctcAACTGGATCCCCATCCTCCAGATGCAGAAGTACCACTCCATCGCCGATGTCACCCTCGAGCTTCGCAGAGTCACTGACGCAAACCTCAACGCGGAAAACAAAAGCCACGAGAAAGCCACGTCCACTGAAAATGGTGCTGACGAACACCAACACCAGCCCGAACACGAGGAGTATGAATCTCCCGAGAGCGAGGTTACTGATTCAGGATCTCAAGAAATGCAGGCTAGTTCCATGAACGTTAATATATGTTCAAATCATGAAGAGTGTGAAGGACGTTCTTCACAGTTCAAGTTGACAAAAGGTTTCACAGCAAAAGAGTCTGTGAAGGGACATATGGTGAATGTGGTTAAAGGGTTGAAGTTATATGAGGACGTTTTCACGGATTCAGAGCTGTGCAAGCTGACAGATTTTGTGAATGAAATCCATGCTGCTGGCCAGAATGGGGAACTGTCAGGTGAAACTTTTATATTATTCAACAAGCAGATGAAGGGAAACAAGAGAGAGCTGATTCAGTTGGGTGTTCCAATATTTGGAAAGATAAAGGAGGACGCAAAAAGCAATATAGAGCCTATTCCAGCACTTCTCCAAGGTGTCATTGATCACCTTATTCAGTGGCAATTACTTCCCGAGTACAAAAGACCAAATGGTTGTATCATCAACTTTTTTGAAGAGGTAAATTTCCATACTTTCCCACTTACTCCTCTTAAGTTCTAA 945 0.4296 MAAGPTPPPSDRPTLLPPPMLVSDSFAKDAILAWFRGEFAAANAIIDALCAHLASDSPSASASDYDAVFAAIHRRRLNWIPILQMQKYHSIADVTLELRRVTDANLNAENKSHEKATSTENGADEHQHQPEHEEYESPESEVTDSGSQEMQASSMNVNICSNHEECEGRSSQFKLTKGFTAKESVKGHMVNVVKGLKLYEDVFTDSELCKLTDFVNEIHAAGQNGELSGETFILFNKQMKGNKRELIQLGVPIFGKIKEDAKSNIEPIPALLQGVIDHLIQWQLLPEYKRPNGCIINFFEEVNFHTFPLTPLKF 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01165 314 Coils Coil 91 111 - -
Cca02g01165 314 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 12 306 IPR044842 GO:0003729|GO:0006402|GO:0032451
Cca02g01165 314 PANTHER 2OG-FE(II) OXYGENASE FAMILY OXIDOREDUCTASE 12 306 - -
Cca02g01165 314 Gene3D - 179 305 IPR037151 -
Cca02g01165 314 MobiDBLite consensus disorder prediction 107 152 - -
Cca02g01165 314 MobiDBLite consensus disorder prediction 107 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01165 Cca-Chr2 29150049 29156136 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01165 K10767 - gmx:100791586 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01165 02 29150049 29156136 Cca02g01165 02 29150049 29156136 ECH
Cca03g02079 03 41035840 41043511 Cca02g01165 02 29150049 29156136 PCT