Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02075 ATGGTGTCTCCAATGCAAGAGCCAGTCCCACCCCATTCCCTCACCAACAACACCCACGGCCATTTCTCCATCATGCTCAACCTCCTCAACAAGAACCTCCGCCGCGTCCTCCGCTGGCCACTAAGGCGTCGTTCCAACTCCAAGCTACGCTTCGGCGAACCAACCACCGAAGCAGCTCCTCCCCATAGACCAATACGAATCGCAACGTTCAACGCCGCATTCTTCTCCATGGCCTCGGTCGACATTCCCGAAGCAGACAACAACGTAGGAGGATCGAAGTCAACGTACGATCGACCACGAAGCATTCTGAAAGCGTCGCAGTCGCAGAGTCCGGTGCCGGGTAAGTCGAAGCCGAGAGTGTCCATCAACTTACCCGACAACGAGATTTCGGTGCGGCAAACGAGCTTCTCCGAAAGCGAGAGGAAAGGGTCGTCGTGGAGTTTCCGTGAGGGACAGAGAAAAACGGTGGTTGAAGTTCTGCGAGAGTTAAACGCCGACGTTTTGGGTTTGCAAGACGTGAAGGCGGAGGAAGAGAACGGAATGAAGCCTTTGTCTGATTTGGCTCGTGCTCTTGGGATGAACTACGTCTTCGCCGAAAGCTGGGCTCCTCAATACGGCAACGCCGTTTTGTCCAAGTGGCCCATCAAACGCTGGAACCTACACAAAATCTTCGACCACACTGATTTCAGGAATGTTCTGAAGGCCACTATCGATGTACCCCAAGAAGGTGAACTGCACTTTTACTGTACCCACCTTGATCATCTTGATGAGAATTGGAGAATGAAACAGATAATTGCAATAATTCAATCGAATGATGAGCCACACATTTTAGCTGGAGGCCTTAATTCGCTCGATGAATCAGATTATTCCCAAGAAAGATGGACAGATATTGTAAAGTACTACGAAGAGATGGGAAAGCCAACACCGAAGGTTGAAGTGATGAAATATCTCAAGAGCAGACACTACACAGATGCTAAGGACTTTGCAGGGGAATGTGAATCCGTTGTCATGATTGCCAAAGGCCAAAGTGTCCAAGGGACATGCAAGTATGGAACTCGAGTGGATTACATTTTGTCTTCCTCAGATTCTCCATATAAGTTCGTTTCCGGATCCTACTTAGTTCTTTCTTCCAAAGGGACTTCAGATCATCACATAGTGAAAGTTGATGTGGCAAAAGTAATTAAATAG 1188 0.4865 MVSPMQEPVPPHSLTNNTHGHFSIMLNLLNKNLRRVLRWPLRRRSNSKLRFGEPTTEAAPPHRPIRIATFNAAFFSMASVDIPEADNNVGGSKSTYDRPRSILKASQSQSPVPGKSKPRVSINLPDNEISVRQTSFSESERKGSSWSFREGQRKTVVEVLRELNADVLGLQDVKAEEENGMKPLSDLARALGMNYVFAESWAPQYGNAVLSKWPIKRWNLHKIFDHTDFRNVLKATIDVPQEGELHFYCTHLDHLDENWRMKQIIAIIQSNDEPHILAGGLNSLDESDYSQERWTDIVKYYEEMGKPTPKVEVMKYLKSRHYTDAKDFAGECESVVMIAKGQSVQGTCKYGTRVDYILSSSDSPYKFVSGSYLVLSSKGTSDHHIVKVDVAKVIK 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02075 395 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE, PGAP2-INTERACTING PROTEIN-RELATED 153 394 - -
Cca03g02075 395 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE, PGAP2-INTERACTING PROTEIN-RELATED 47 134 - -
Cca03g02075 395 Pfam Endonuclease/Exonuclease/phosphatase family 152 383 IPR005135 GO:0003824
Cca03g02075 395 PANTHER CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR 153 394 - -
Cca03g02075 395 PANTHER CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR 47 134 - -
Cca03g02075 395 MobiDBLite consensus disorder prediction 88 116 - -
Cca03g02075 395 SUPERFAMILY DNase I-like 63 390 IPR036691 -
Cca03g02075 395 MobiDBLite consensus disorder prediction 85 122 - -
Cca03g02075 395 Gene3D Endonuclease/exonuclease/phosphatase 139 392 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02075 Cca-Chr3 41018880 41021594 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02075 - - gmx:100820515 597.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02075 03 41018880 41021594 Cca03g02075 03 41018880 41021594 ECH
Cca03g02075 03 41018880 41021594 Cca02g01173 02 29271025 29275006 PCT