Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01173 ATGATCTCCCCAAGGCAAGACCCTCTTTTGTCCCACACCCACTTTTCCACAATGCTCAAGCTCCTCAACAAGAACCTCCGCCGCCTCCTCCGCCGTCTCCGGTGGCCAATTCGCCGCCGCTCAAAGTCCAAAGTAGTAGTGATCAGCAAGCTCGGGAAGAAGGACCCAGAAGCCGAACCCGAAGCAAGCACGAATTTTTCCGCTACGGTTCATTCCAAAGCGCAATTGGGTACTCCGAAACCGATTCGGGTGGCGACGTTCAACGCCGCCCTGTTCTCCATGGCAGCGGCGCTTCCAAAAGCAGCGGCGTCGGAGGAGCAAAACGGCGTCGCTTCGAAGCCGACGAATGCGCGGCCCAGAAGCATATTGAAGCAATCGCAGTCAGTGAAGAGAGTGGAGGAGAACGTGGGCGTGAGACAGGAAGCGAGGTCGGCGAAATCGAAGATGAGGGTTTCGATAAACTTACCGGACAACGAGATATCTTTGTTGCGAAGCAGACAATCGAGTTTCTCGGAACACGAGAAGGAGGGGTGGGGGAGTGGGGTCCACGTGAGTAAGAGTAATAGAACGGTGGTTGATGTTTTGAAGGAAGTGAACGCTGATGTTTTGGGGTTGCAAGATGTGAAGGCTGAGGAAGAGAATGGGATGAAGCCTTTGTCTGATTTGGCTGCGGCTCTTGGAATGAACTATGTCTTCGCTGAAAGCTGGGCACCTGAGTACGGCAATGCTGTCTTGTCCAAATGGCCCATCAAACGCTGGAAATCTCACAAAATCTTTGATCGCACTGATTTCAGGAATGTTTTGAAGGCCACTATCGATGTACCCCAAGCAGGTGAACTTAACTTCTACTGCACACACCTTGATCATCTTGATGAGAATTGGAGGATGAAACAGATAAATGCAATAATCCAATCTAGTGATGAGCCTCACATCTTAGCTGGAGGCCTTAATTCACTTGATGAATCGGATTACTCCCAAGAAAGATGGACAGATATTGTGAAGTACTACGAGGAGATGGGAAAGCCAACACCAAAGGTTGAAGTGATGAAATATCTCAAGAGTAAAGACTACACAGATGCAAAGGATTATGCAGGGGAATGCGAGTCGGTTGTCATGATTGCCAAAGGCCAAAGTGTTCAGGGGACATGTAAGTATGGAACTCGGGTAGACTATATATTATCATCCTCAAATTCTGCGTATAAATTTGTTCCCGGTTCCTATTTAGTCCTTTCTTCCAAAGGGACATCAGATCATCACATAGTGAAAGTTGACGTGGTGAAGGCAAATAACAATACTGAAGAAAATGTGACAAAGCATCCGCAGCAACAACCAAGACAGAGAGTTGTAAGAATAACACAATCCACTCCGTCAAGAGGTATCTGGAAAACACACACTTGA 1398 0.48 MISPRQDPLLSHTHFSTMLKLLNKNLRRLLRRLRWPIRRRSKSKVVVISKLGKKDPEAEPEASTNFSATVHSKAQLGTPKPIRVATFNAALFSMAAALPKAAASEEQNGVASKPTNARPRSILKQSQSVKRVEENVGVRQEARSAKSKMRVSINLPDNEISLLRSRQSSFSEHEKEGWGSGVHVSKSNRTVVDVLKEVNADVLGLQDVKAEEENGMKPLSDLAAALGMNYVFAESWAPEYGNAVLSKWPIKRWKSHKIFDRTDFRNVLKATIDVPQAGELNFYCTHLDHLDENWRMKQINAIIQSSDEPHILAGGLNSLDESDYSQERWTDIVKYYEEMGKPTPKVEVMKYLKSKDYTDAKDYAGECESVVMIAKGQSVQGTCKYGTRVDYILSSSNSAYKFVPGSYLVLSSKGTSDHHIVKVDVVKANNNTEENVTKHPQQQPRQRVVRITQSTPSRGIWKTHT 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01173 465 Pfam Endonuclease/Exonuclease/phosphatase family 184 418 IPR005135 GO:0003824
Cca02g01173 465 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN 185 464 - -
Cca02g01173 465 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN 18 177 - -
Cca02g01173 465 Gene3D Endonuclease/exonuclease/phosphatase 178 428 IPR036691 -
Cca02g01173 465 PANTHER CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR 185 464 - -
Cca02g01173 465 PANTHER CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR 18 177 - -
Cca02g01173 465 SUPERFAMILY DNase I-like 83 425 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01173 Cca-Chr2 29271025 29275006 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01173 - - gsj:114390420 721.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01173 02 29271025 29275006 Cca02g01173 02 29271025 29275006 ECH
Cca03g02075 03 41018880 41021594 Cca02g01173 02 29271025 29275006 PCT