Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02067 ATGGACGTCGTTGCTTCCTATTCCTTGCTTTTCATGTGCTTCGTTCAAACCGTACGAGCCATTCTAGACCCCAACGATTTCCTCGCTCTGCAATCCATTCGGAAATCGCTTCACGATGTCCCCGGCTCCAATTTCTTCGCCACCTGGGACTTCACCGCCGACCCCTGCAACTTCGCCGGCGTATACTGCGCCGCCGACAAAGTGGTCGCGCTCAACCTCGGCGACCCCCGCGCCGGTTCCCCCGGTCTAACCGGAAAACTAGACCCTTCCATTTCCAAACTCTCCGCTCTGGCCGACTTCACCGTGGTTCCGGGAAGAATCTACGGTCCACTCCCTCAAACCCTCTCCCAACTAAAAAACCTCCGGTTCCTGGGCGTGAGTCGGAACTTCATCTCCGGTTCGATCCCCTCCGGTTTGGGGAACCTTCGCAAAGTGAGAACCATCGATCTCAGCTACAACCAGCTCAGCGGAACAATCCCTCCCTCCATCGGAGCCATGCCGGAGTTAACCAACCTCATCCTCTGCCACAACCGTCTCTCCGGTTCGGTTCCCTCCTTCGCCTCGGCTCATACCCTAACCCGCCTCGAACTCAAACACAACTCTCTCTCCGGTTCGCTCGGACCGCATtctctccctccctccctccagtacctctccctcTCATGGAATCGCCTTAGTGGGCCCGTGGACCGCCTCTTAACCCAACTCACCCGGCTCAACTACCTGGACCTTAGTTTAAACCAGTTCACAGGCCCAATCCCGGCCCAGCTGTTCTCATTCCCTCTCACAAACCTACAACTCGAGAGAAACCAATTCAGCGGCCCGGTCCAACCCGTTAATGAAGTAACGATCGAAACCGTTGATCTGAGCTATAACCGCCTATCGGGTGCGGTGTCGCCCATGCTAGCGAGCGTGCAGAACCTGTACCTGAACAACAACGGCTTCACGGGGCAAGTTCCGGTGACCTTCGTCCAGCGGTTGTTGGCGGCGGGGATTCAGATTCTGTATTTGCAGCACAATTTCTTGACCGGAATCGCCATAAGCCCCACGGCGGAGATTCCGGGAAGCAGTACTCTGTGTTTGCAGTACAATTGCATGGTGCCGCCCGTTCAGACGGCGTGCCCCTTCAATGCCGGCAAGAGGAAAATACGGCCAGCTGAGCAGTGTAACCGCCGCTGA 1179 0.5505 MDVVASYSLLFMCFVQTVRAILDPNDFLALQSIRKSLHDVPGSNFFATWDFTADPCNFAGVYCAADKVVALNLGDPRAGSPGLTGKLDPSISKLSALADFTVVPGRIYGPLPQTLSQLKNLRFLGVSRNFISGSIPSGLGNLRKVRTIDLSYNQLSGTIPPSIGAMPELTNLILCHNRLSGSVPSFASAHTLTRLELKHNSLSGSLGPHSLPPSLQYLSLSWNRLSGPVDRLLTQLTRLNYLDLSLNQFTGPIPAQLFSFPLTNLQLERNQFSGPVQPVNEVTIETVDLSYNRLSGAVSPMLASVQNLYLNNNGFTGQVPVTFVQRLLAAGIQILYLQHNFLTGIAISPTAEIPGSSTLCLQYNCMVPPVQTACPFNAGKRKIRPAEQCNRR 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02067 392 SUPERFAMILY L domain-like 24 366 - -
Cca03g02067 392 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Cca03g02067 392 Pfam Leucine rich repeat 167 225 IPR001611 GO:0005515
Cca03g02067 392 Pfam Leucine Rich Repeat 145 164 IPR001611 GO:0005515
Cca03g02067 392 Gene3D Ribonuclease Inhibitor 25 188 IPR032675 -
Cca03g02067 392 Gene3D Ribonuclease Inhibitor 189 379 IPR032675 -
Cca03g02067 392 PANTHER LRR RECEPTOR-LIKE KINASE 2 391 - -
Cca03g02067 392 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 2 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02067 Cca-Chr3 40916741 40917919 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02067 26 370 Receptor kinase-like Gene Family AT3G51740 33.516 3.39e-36 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02067 - - gmx:100817314 701.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02067 03 40916741 40917919 Cca03g02067 03 40916741 40917919 ECH
Cca03g02067 03 40916741 40917919 Cca02g01178 02 29331537 29332712 PCT