Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01178 ATGGCGAAGTGCGCAGTGCTTTTCTTTTTCTTCTGTTTGCTGCATGTGCAGGCTATTTTGGACCCTGCGGATTTTCTCGCTCTGCAATCCATTCGCAAAGCCCTACAAGACATGCCAGGCTCCGATTTCTTCTCCTCCTGGGACTTCACCGCCGACCCCTGCACCTTCGCCGGCGTTTACTGCGACTCCGACAAGGTCATCGCGCTCAACCTCGGCGACCCCAAGGCCGGCTCCCCCGGCCTCACCGGCCGCCTCGACCCCGCCCTCGGGAAACTCTCCGCGCTCGCCGAGCTCACCGTCGTTCCCGGACGCATTTACGGTACTCTCCCGGAGTCTCTCTCCGATTTGAAGAACCTCAGGTTCCTCGGCGTCAACCGCAACTTCATCTCCGGCGAAATCCCAACCAAACTCGGGGAGCTGCGGAACCTCCGCACCATCGATCTCAGTTACAACCAACTCACCGGACGCATTCCTCCAACGGTTGGATCACTGCCGGAGCTAACCAACTTGATCCTCTGCCACAACCGTCTCTCCGGTTCGGTTCCGCGGTTCGAGTCGCGCGCACTAACCCGGCTTGACCTTAAACACAACGCTCTCTCCGGTTCGCTGCCTCCCAACTCGCTCCCTCCCTCTCTGCAGTACCTCTCACTCGCGTGGAACCAACTTACAGGCCCAATGGACCGCCTCCTGACCCGCCTCGACCAACTAAACTACTTGGACCTTAGTTTGAACCGCTTCACGGGCCCAATCCCGGGCCGGATCTTTTCTTTCCCGCTGGCGAATCTTCAGCTGGAGAGGAACGAGTTCTCGGGCCCGGTCCAGCCCACGGAGCAGGTGTCGATCTCGACCGTTGATCTGAGCTACAACCGGTTGTCGGGTGAGATATCGTCGATGCTGGCGAGCGTGCAGAATCTGTACCTGAACAACAACCGGTTCACGGGTCGGGTACCGGCGAGCTTCGTGGATCGGTTGCTGGACGCGAGCATTCAGATACTGTACTTGCAGCATAACTATCTCACCGGAATTGAGATAAGCCCCACCGCGGTGATTCCCGAGAGAAGCTCCCTTTGTCTCCAGTATAACTGCATGGTCCCTCCCGTAGAGACCCCCTGCCCCTTGAGGGCTGGCAACCAGAAAACCAGACCTACCCTGCAGTGCAACCAGTTTAAGAACTGA 1176 0.5842 MAKCAVLFFFFCLLHVQAILDPADFLALQSIRKALQDMPGSDFFSSWDFTADPCTFAGVYCDSDKVIALNLGDPKAGSPGLTGRLDPALGKLSALAELTVVPGRIYGTLPESLSDLKNLRFLGVNRNFISGEIPTKLGELRNLRTIDLSYNQLTGRIPPTVGSLPELTNLILCHNRLSGSVPRFESRALTRLDLKHNALSGSLPPNSLPPSLQYLSLAWNQLTGPMDRLLTRLDQLNYLDLSLNRFTGPIPGRIFSFPLANLQLERNEFSGPVQPTEQVSISTVDLSYNRLSGEISSMLASVQNLYLNNNRFTGRVPASFVDRLLDASIQILYLQHNYLTGIEISPTAVIPERSSLCLQYNCMVPPVETPCPLRAGNQKTRPTLQCNQFKN 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01178 391 Gene3D Ribonuclease Inhibitor 23 185 IPR032675 -
Cca02g01178 391 PANTHER LRR RECEPTOR-LIKE KINASE 4 388 - -
Cca02g01178 391 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 4 388 - -
Cca02g01178 391 SUPERFAMILY L domain-like 25 364 - -
Cca02g01178 391 Pfam Leucine Rich Repeat 142 164 IPR001611 GO:0005515
Cca02g01178 391 Gene3D Ribonuclease Inhibitor 186 367 IPR032675 -
Cca02g01178 391 Pfam Leucine rich repeat N-terminal domain 22 62 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01178 Cca-Chr2 29331537 29332712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01178 19 341 Receptor kinase-like Gene Family AT3G51740 33.056 9.27e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01178 - - gmx:100794756 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01178 02 29331537 29332712 Cca02g01178 02 29331537 29332712 ECH
Cca03g02067 03 40916741 40917919 Cca02g01178 02 29331537 29332712 PCT