Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02042 ATGGCTCGTTACGGCGAGGGCGACAAGCGTTGGATCGTGGAGGACCGGGCCGACGGCACGAACGTCCACAACTGGCATTGGGCCGAGACCAACTGCCTGGAGTGGTCCAAGGCCCTTTTCACCACGCTCCTCTCCAACCTCACCCTCCTCGACGGCGAGGGCAACCTCTTCCTCAAAACGACGTCGCTCCGCTCCCTCGACGGCGAGGCCTACGTCAACGTCCGCAAGGGCAAAATCATCCCCGGCTACGAGATCAGCCTCTCGCTCGCGTGGCAGGGCGAGGCCAAAGACTCCCAAGGCGCCTCCCTCCTCAAGGTCGACGGCACCGTCGATATTCCCTACATCTCCGACGAGAACGCCGACGAGGATCCCGAGGTCAAGGTCACCGTCAACGACGATGGACCCCTCGGGAAGAGAATCAAGGATGCTATGCTCTCCAAGGGGAAACCCTTGATTTTGGACAAGGTTAGGGTTTGGGTCCAGACTATGGCCAGAGGCGGTCCCCTCAAAGACGAATTGGACACCAAGAAGGTTGCGCCGGTgccctcaccgtcgccttcgccttcgccttcgcAGGCGCCGACGGCTCCGGCGACCAAGGCGGCGCCgaagaaggaggcgaagaaggaggagaagaaggggaggaagaGTATTAGCATGACGGAGAAGTTTAATTGCAGGGCGAGGGATTTGTTTGAGATTTTGATGGATGAGAATAGGTGGAAGGGTTTTACGCAGAGCAATGCGAGGATTAGTAAGGAGGTTGGTGGTGAGTTTAGCATTTTTGATGGGTCGGTTACTGGAACTAATTTGGAGTTGCAGGAGGGTAAGTTAATTGTGCAGAGGTGGAGGTTTGGAAGCTGGAACGATGGTGTTCAGTCCACGGTGAGGCTTGTCTTTGAGGAGCCTGAAGCTGGTGTTACCGTTGTCAAGCTGACTCATACTGATGTGCCTGAAGAGGATAGGTATGGGAATGCTACTGTGGTGGAGAACACGGAAAGGGGTTGGCGGGATCTTATTTTCCAGAGGATACGTGCGGTTTTTGGTTTTGGAATTTGA 1059 0.5184 MARYGEGDKRWIVEDRADGTNVHNWHWAETNCLEWSKALFTTLLSNLTLLDGEGNLFLKTTSLRSLDGEAYVNVRKGKIIPGYEISLSLAWQGEAKDSQGASLLKVDGTVDIPYISDENADEDPEVKVTVNDDGPLGKRIKDAMLSKGKPLILDKVRVWVQTMARGGPLKDELDTKKVAPVPSPSPSPSPSQAPTAPATKAAPKKEAKKEEKKGRKSISMTEKFNCRARDLFEILMDENRWKGFTQSNARISKEVGGEFSIFDGSVTGTNLELQEGKLIVQRWRFGSWNDGVQSTVRLVFEEPEAGVTVVKLTHTDVPEEDRYGNATVVENTERGWRDLIFQRIRAVFGFGI 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02042 352 Pfam Activator of Hsp90 ATPase homolog 1-like protein 228 348 IPR013538 -
Cca03g02042 352 Gene3D - 215 351 IPR023393 -
Cca03g02042 352 PANTHER ACTIVATOR OF 90 KDA HEAT SHOCK ATPASE-LIKE PROTEIN 1 352 - -
Cca03g02042 352 MobiDBLite consensus disorder prediction 202 220 - -
Cca03g02042 352 SUPERFAMILY Bet v1-like 217 351 - -
Cca03g02042 352 Pfam Activator of Hsp90 ATPase, N-terminal 29 164 IPR015310 GO:0001671|GO:0051087
Cca03g02042 352 SUPERFAMILY Activator of Hsp90 ATPase, Aha1 20 165 IPR036338 -
Cca03g02042 352 SMART Aha1_N_2 29 165 IPR015310 GO:0001671|GO:0051087
Cca03g02042 352 CDD SRPBCC_Aha1 217 350 - -
Cca03g02042 352 PANTHER HEAT SHOCK PROTEIN 90 HSP90 CO-CHAPERONE AHA-1 1 352 IPR039981 GO:0001671|GO:0051879
Cca03g02042 352 Gene3D - 18 172 IPR036338 -
Cca03g02042 352 MobiDBLite consensus disorder prediction 170 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02042 Cca-Chr3 40611162 40614036 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02042 - - gmx:100784184 583.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02042 03 40611162 40614036 Cca03g02042 03 40611162 40614036 ECH
Cca03g02042 03 40611162 40614036 Cca02g00727 02 17410232 17413538 PCT