Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00727 ATGGCGAGGTTCGGCGAGGGCGACAAGCGGTGGATCGTGGCCGAGCGCCCCGACGGCACCAACGTCCACAACTGGCACTGGGCCGAGACCGACTGCTTAGAATGGTCCAAAGCCTTCTTCAAGAACCACCTCACAAACGTCGCCGTGgccaccgccgccaccgccgccgaagcctccgtcaccatcaccAAACTCCAGAGGCTGGACGGCGAGGCCTACGTGAACGTCCGCAAGGGCAAGGTCATCCCAGGCTACGAGATCAGCCTCCTCATCGCCTGGGAAGGCCAGCTCCATTCCGCCAAAGTCTCCGGCGCCGCCGAGATCCCCTACCTCGCCGACGAAAACGCCGGGGAGGATCCCGAGGTGAGAGTCAAGGTCAAGGAGGACGGCGAGGTCGCCAGCAAGCTGAAGGAGGTTATGGCGACGAAGGGGAAGGAGCTGATTCTGGAGAGGGTTAGGGTTTGGGAGGCCAGCATGGCGAAGGGCGGGCCGGTGAAGGAGGAGCTCGAGGCGAAGAAGGCGGCGAAGCGTGCCGCTGCGGCGGAGAAGAGGAGTGCGGGGAAGAAGGGGTGTAAGGTGATTAGTTTGACGGAGAGGTTTAGGTGCAGGGCGAGGGACTTGTTTGAGATAATGATGGATGAGAATATGTGGAAGGGGTTCACGCAAAGTAATGCGAGGATTAGTAGGGAGGTTGGTGGGGAGTTTAGTATTTTCGATGGGTCGGTGATTGGGAGGAATCTTGAGTTGCAGGAAGGGAAGTTGATCGTGCAGAGGTGGAGGTTCGGGAGCTGGCCTCATGGGATGCAATCAACGGTGAGGATTGTGTTTGAGGAGCCTGAAACTGGAGTTACTGTTGTTAAGCTCACGCATAGTGATGTGCCTGAAGAAGACAGATATGGGAATGCAACTGTGGTGGAGAACACACAGAGAGGGTGGCGGGACCTCATTTTCCAAAGGATAAGGGCTGTGTTTAATTTTGGAATTTGA 987 0.5441 MARFGEGDKRWIVAERPDGTNVHNWHWAETDCLEWSKAFFKNHLTNVAVATAATAAEASVTITKLQRLDGEAYVNVRKGKVIPGYEISLLIAWEGQLHSAKVSGAAEIPYLADENAGEDPEVRVKVKEDGEVASKLKEVMATKGKELILERVRVWEASMAKGGPVKEELEAKKAAKRAAAAEKRSAGKKGCKVISLTERFRCRARDLFEIMMDENMWKGFTQSNARISREVGGEFSIFDGSVIGRNLELQEGKLIVQRWRFGSWPHGMQSTVRIVFEEPETGVTVVKLTHSDVPEEDRYGNATVVENTQRGWRDLIFQRIRAVFNFGI 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00727 328 PANTHER HEAT SHOCK PROTEIN 90 HSP90 CO-CHAPERONE AHA-1 1 328 IPR039981 GO:0001671|GO:0051879
Cca02g00727 328 Gene3D - 193 328 IPR023393 -
Cca02g00727 328 Gene3D - 18 172 IPR036338 -
Cca02g00727 328 SUPERFAMILY Activator of Hsp90 ATPase, Aha1 20 161 IPR036338 -
Cca02g00727 328 Coils Coil 166 186 - -
Cca02g00727 328 PANTHER ACTIVATOR OF 90 KDA HEAT SHOCK ATPASE-LIKE PROTEIN 1 328 - -
Cca02g00727 328 SMART Aha1_N_2 29 161 IPR015310 GO:0001671|GO:0051087
Cca02g00727 328 CDD SRPBCC_Aha1 194 326 - -
Cca02g00727 328 Pfam Activator of Hsp90 ATPase, N-terminal 29 160 IPR015310 GO:0001671|GO:0051087
Cca02g00727 328 Pfam Activator of Hsp90 ATPase homolog 1-like protein 205 323 IPR013538 -
Cca02g00727 328 SUPERFAMILY Bet v1-like 194 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00727 Cca-Chr2 17410232 17413538 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00727 - - gmx:100775568 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00727 02 17410232 17413538 Cca02g00727 02 17410232 17413538 ECH
Cca03g02042 03 40611162 40614036 Cca02g00727 02 17410232 17413538 PCT