Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02040 ATGGCTGATGCCACCAAGTACGTTCCCATCggtggtggtggcggtggcggtggCAACCTCGCCACAGACCTCAAGAGCCTCTCCTCCATTCTCAAAACAAGAAAAACACTCGCTTTTGCCTATGCCTCCATGCTCGCCTTCGTCGCTTTCACTCTTTTCTTAGCCTTTTCTCCTTCTCCAAACGCTTCCTCTCCTTGGTTCTCCAACATCTTCTCTTCAACATCTACCTCAGACGCTAACTACGACCCTCAAATTCCAAACATTTTCTCTTTCCTTTTCCCAAACACCACTAACTCTTCTAGATCTGCCAATGCCAACACAACCACACCAACCTCTTTGCAAAACCAAACCCAAACCTTACTGAATTCATCCCAAGATGCATTTCCTGTTCCTATTCCAAGCACAAACCTGACCAAAATTTCTCACGCACCAACTTTGGTGGTGAAGTCACCACCCCTTGATGTCAAAAATCTCACTTTTAACCCCATGACCACAAATCAAACTACAAATGTTACTGCATCCGCACCTACACCTGCACCTGCAACCAGTGTTTCTCGAAGTTCCCCTCTCCAGAGTGTTCCTCATCAGAACTCTAGTTTTAATTCTTCGGTGAAGGGTGTTGTGGCGAATAATAATTACACGGCTTCTCTGGCGAGGAAGCAGAGCAATGGGAACAATCACTCTAAGGGGAAGGATGAATTGATGGAGTCTATGATCAAGtgtgatttttttgatggagaatgggttaaggatgattcatatcctctctacaagccagattcttgctctttgattgatgaacagttcaattgtattaggaatggaaggcctgataaagaatatcagaaatataagtggaaacccaaagggtgcagcctcccaaggttggatgcccatcgaatgctggatttgttgagagggaaaagattggtttttgtaggcgattcgctcaataggaacatgtgggagtctctgatttgcatattgagaaatgctgtgaaagataaacacaacgtttatgaagccaatggcagggttcatttcagaggggaagcctcgtattcatttatattcaagGATTATAAATTCTCCGCGGAGCTTTTTGTGTCTCCGTTTTTGGTTCAAGAAGGGGAAATGACTGATAAGAACGGGACAAAGAAGGAAACACTTCGTCTCGATTTAGTTGGTCAATCTTCATCTCAATATAAAGATGCAGATATTCTCATCTTCAACACTGGTCACTGGTGGACTCATGATAAAACTTCTAAAGGGAAGGACTATTACCAAGAAGGTAGCCATGTGTACGCTGAATTAAACGTTCTTGAGGCATTTCGAAAAGCTATAACAACTTGGAGCAGGTGGGTTGATGCCAACGTAAATCCATCCAAGACCGTGGTCTTCTTCAGAGGCTATTCTGCATCCCATTTCAGTGGTGGACAATGGAATTCAGGTGGACAATGTGATAGTGAAACTGATCCAATTGACAACGAGAAGTACCTAAATGAGTATCCAGATAAGATGAAGGTTCTGGAGAAGGTGCTAAAGAATATGAAAACTCGCGTGACCTACCAAAACATCACTAGAATGACGGATTTCAGAAAAGATGGTCACCCCTCAATATATAGGAAGCAAAATCTATCACCTGAGGAAAGAAAATCACCATTGAGATTCCAAGATTGCAGCCACTGGTGCCTTCCGGGTGTTCCTGATTTGTGGAATGAAATTCTCTATGCTGAACTTCTAATGAGAGAGTATCGGAATAAGCATGAGCAGAAGAGAGCATAG 1785 0.3417 MADATKYVPIGGGGGGGGNLATDLKSLSSILKTRKTLAFAYASMLAFVAFTLFLAFSPSPNASSPWFSNIFSSTSTSDANYDPQIPNIFSFLFPNTTNSSRSANANTTTPTSLQNQTQTLLNSSQDAFPVPIPSTNLTKISHAPTLVVKSPPLDVKNLTFNPMTTNQTTNVTASAPTPAPATSVSRSSPLQSVPHQNSSFNSSVKGVVANNNYTASLARKQSNGNNHSKGKDELMESMIKCDFFDGEWVKDDSYPLYKPDSCSLIDEQFNCIRNGRPDKEYQKYKWKPKGCSLPRLDAHRMLDLLRGKRLVFVGDSLNRNMWESLICILRNAVKDKHNVYEANGRVHFRGEASYSFIFKDYKFSAELFVSPFLVQEGEMTDKNGTKKETLRLDLVGQSSSQYKDADILIFNTGHWWTHDKTSKGKDYYQEGSHVYAELNVLEAFRKAITTWSRWVDANVNPSKTVVFFRGYSASHFSGGQWNSGGQCDSETDPIDNEKYLNEYPDKMKVLEKVLKNMKTRVTYQNITRMTDFRKDGHPSIYRKQNLSPEERKSPLRFQDCSHWCLPGVPDLWNEILYAELLMREYRNKHEQKRA 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02040 594 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 23 587 IPR029962 GO:0016413
Cca03g02040 594 MobiDBLite consensus disorder prediction 166 203 - -
Cca03g02040 594 Pfam PMR5 N terminal Domain 240 291 IPR025846 -
Cca03g02040 594 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 293 578 IPR026057 GO:0016740
Cca03g02040 594 PANTHER PMR5/CAS1P GDSL/SGNH-LIKE ACYL-ESTERASE FAMILY PROTEIN 23 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02040 Cca-Chr3 40574594 40578029 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02040 - - gmx:100811425 963.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02040 03 40574594 40578029 Cca03g02040 03 40574594 40578029 ECH
Cca03g02040 03 40574594 40578029 Cca02g00728 02 17463158 17466791 PCT