Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02032 ATGATGGTGAAAGCAATCCAACTTCAGACATGTGGATTGGTTAGTCAACGATGGAGTTTCAAACCCCGCATAGTCTCATCCTTCTCCTCATTTCCCCCAATTCCATATCCTAACCCTTATTTCAAACTTCTTCCCACCAACACCGTCCCTCGCAGGGTTCGATTCGCGCCATTTCACGCTTCCTCGTCGCCGCTTCCTTCTGCCGGAAATGTTCGAAACATCAAGTTCTGTCAGTGGTGTGGTGGTTCCACGAAGCATGATATTCCCGAGGGGGAAGAAAAGTTGAGAGGCATATGCACGGTTTGTGGGAGGATTGCGTATCAGAATCCGAAGATGGTAGTTGGCTGCCTCATTGAACATGATAACAAGGTCCTCCTTTGCAAGAGGAGTATACAACCATCTCATGGCCTTTGGACCCTTCCTGCTGGTTATTTGGAAATTGGAGAGTCGGCTGTGGAAGGTGCCATCAGGGAAACAAGGGAAGAAGCAAATGCAGATGTAGAAGTAATTTCTCCATTTGCTCAATTGGATATTCCGTTAATTGGCCAAACTTATATGATATTCTTAGCAAAGCTGAAGAAGCCCCATTTTTCTCCTGGTCCAGAATCATCAGCTTGTCAACTGTTTCCACTTGATGATATACCTTTTAATTCTCTATCCTTTTCATCAATGGTGGTTACCTTAAGTTTGTATGTTGAGGATATTAAGGCTGGAAAGCTCAAATTCCATTACGGAACTATTAACAAAAGGCCGGGTACAAGTCCTTCTGATATTTATGCCTATACACTGGATCAACATATGCATTCATGA 810 0.4383 MMVKAIQLQTCGLVSQRWSFKPRIVSSFSSFPPIPYPNPYFKLLPTNTVPRRVRFAPFHASSSPLPSAGNVRNIKFCQWCGGSTKHDIPEGEEKLRGICTVCGRIAYQNPKMVVGCLIEHDNKVLLCKRSIQPSHGLWTLPAGYLEIGESAVEGAIRETREEANADVEVISPFAQLDIPLIGQTYMIFLAKLKKPHFSPGPESSACQLFPLDDIPFNSLSFSSMVVTLSLYVEDIKAGKLKFHYGTINKRPGTSPSDIYAYTLDQHMHS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02032 269 Gene3D - 72 108 - -
Cca03g02032 269 ProSiteProfiles Nudix hydrolase domain profile. 109 232 IPR000086 -
Cca03g02032 269 PANTHER NUDIX HYDROLASE 23 65 268 - -
Cca03g02032 269 Pfam Nudix N-terminal 75 108 IPR029401 -
Cca03g02032 269 PANTHER BNAA03G19740D PROTEIN 65 268 - -
Cca03g02032 269 SUPERFAMILY Nudix 75 232 IPR015797 -
Cca03g02032 269 Pfam NUDIX domain 113 214 IPR000086 -
Cca03g02032 269 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 109 260 - -
Cca03g02032 269 ProSitePatterns Nudix box signature. 143 164 IPR020084 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02032 Cca-Chr3 40480664 40486352 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02032 K18453 - gmx:100808417 505.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02032 03 40480664 40486352 Cca03g02032 03 40480664 40486352 ECH
Cca03g02032 03 40480664 40486352 Cca02g00736 02 18072334 18076656 PCT