Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00736 ATGGATTCTTCTTCTGATCACTCTCCTGCTTCATCACTTCATTCTCCAGGAGAAGTTCAAAACGTTAAGTTCTGTCAGTGGTGTGGTGGTCCAACAAAGCATGAAATACCTGAGGGAGAAGAAAGGTTGAGAGCTATATGTACAAGTTGTGGGAAGATTGCCTATCAGAATCCAAAAATGGTAGTTGGTTGCCTCATTGAACATGATAACAAAGTGCTTCTCTGCAAGCGGAAGATTGAACCATCTTATGGCCTATGGACGCTTCCTGCTGGTTATTTGGAAATTGGAGAGTCAGCCATGGAAGGTGCTATTAGGGAAACTAGGGAGGAAGCCAATGCTGAAGTGGAAGTGATTTCTCCCTTTGCTCAATTGGATATTCCTTTAATTGGTCAAACATATATAATCTTCTTAGCAAGGCTAAAGAAGCCCCACTTTTCACCTGGTCCAGAATCATCAGAATGTCAGCTTTTCTCACTCAATGAAATACCTTTCAGTTCTTTATCTTTTTCATCAATGGTGGTTACTTTAAGTTTGTATGTTGAGGATATGAAAGCAGGAGGAAAACCAAAATTCCATTATGGTACCATTAACAAAAGGCCTGGTACTGGTGCTTCTGATATTCATGCCTATACATTGGATGATCATATGAAATCATGA 657 0.4003 MDSSSDHSPASSLHSPGEVQNVKFCQWCGGPTKHEIPEGEERLRAICTSCGKIAYQNPKMVVGCLIEHDNKVLLCKRKIEPSYGLWTLPAGYLEIGESAMEGAIRETREEANAEVEVISPFAQLDIPLIGQTYIIFLARLKKPHFSPGPESSECQLFSLNEIPFSSLSFSSMVVTLSLYVEDMKAGGKPKFHYGTINKRPGTGASDIHAYTLDDHMKS 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00736 218 Pfam NUDIX domain 61 162 IPR000086 -
Cca02g00736 218 PANTHER BNAA03G19740D PROTEIN 11 217 - -
Cca02g00736 218 SUPERFAMILY Nudix 23 184 IPR015797 -
Cca02g00736 218 Pfam Nudix N-terminal 23 56 IPR029401 -
Cca02g00736 218 ProSitePatterns Nudix box signature. 91 112 IPR020084 GO:0016787
Cca02g00736 218 ProSiteProfiles Nudix hydrolase domain profile. 57 180 IPR000086 -
Cca02g00736 218 Gene3D - 20 56 - -
Cca02g00736 218 PANTHER NUDIX HYDROLASE 23 11 217 - -
Cca02g00736 218 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 57 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00736 Cca-Chr2 18072334 18076656 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00736 K18453 - gmx:100777180 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00736 02 18072334 18076656 Cca02g00736 02 18072334 18076656 ECH
Cca03g02032 03 40480664 40486352 Cca02g00736 02 18072334 18076656 PCT