Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02027 ATGAATGAGTTGGGTGGAAGTCAAGTGGCCAAACACGTCCAAATACTATATGTGGGGCCCACCCTCCTCACTCGAACTGGTCACACACTGCTTAAATACGACCTTTCTGCTGCTCACAATCCTTGCCCCTCTCTCATTCATTCCCTCTTCTTCACACAATTTCTCACCACACTTTCAGGCTGTGTGAAGATGGGGGCTGGTGGCAGAACCTCTGTTCCTCCCTCCAACAGGAAGTCAGAGAGTGACACCATAAAGCGGGTGCCATTTGAGAAACCTCCGTTTACTCTGAGTCAGATCAAGAAGGCCATTCCACCTCACTGTTTCAAGCGCTCTGTTCTCCGCTCATTCTCCTATGTTGTTTATGACCTCACCATAGCCTTCTGTCTCTACTATGTTGCCACCCATTACTTCCACCACCTTCCCCGTCCTCTCTCTCTCTTGGCATGGCCACTCTACTGGGCTGTCCAAGGTTGCATCCTCACTGGCGTTTGGGTCATTGCCCATGAGTGTGGCCACCATGCATTCAGTGACTACCAGCTGCTCGATGATATTGTTGGCCTTCTTCTCCACTCTTTTCTCCTAGTCCCCTATTTTTCATGGAAATACAGCCATCGCCGCCACCACTCCAACACGGGTTCTCTTGAGCGAGATGAAGTGTTTGTGCCAAAGCAGAAGTCCAGCATGAAGTGGTACTCTAAATACCTTAACAATCCACCAGGCAGAGTCATCACACTTGCTATCACCCTCACACTTGGTTGGCCCTTGTACTTGGCTTTCAATGTTTCAGGCAGGCCTTATGAAAGGTTTGCTTGCCACTATGACCCCTATGGCCCCATTTACTCTGATCGTGAACGCCTTCAAATATATATATCAGATGCAGGAGTACTTGCAGTATGCTATGGCCTTTTCCATCTTGCCATGGCAAATGGGCTTGCCTGGGTCTTGTGTGTTTACGGAGTTCCATTGCTAGTGGTGAATGGATTTTTGGTGTTGATTACATACTTGCAGCATACTCACCCTGCATTGCCACACTACAATTCCTCTGAGTGGGACTGGTTGAGAGGAGCATTGGCAACAGTGGATAGAGATTACGGAATCCTGAACAAGGTCTTCCATAATATTACGGATACCCATGTAGCACATCACTTGTTCTCTACGATGCCACATTATCATGCAATGGAGGCTACAAAGGCAATAAAGCCCATTTTGGGAGACTATTATCGGCTCGACCAGACACCATTTATCAAGGCAATGTGGAGAGAGGCTAAAGAATGTATTTATGTGGAGCCAGATCAAAGTACGGAGAACAAAGGTGTATTTTGGTACAACAACAAGTTGTGA 1341 0.4743 MNELGGSQVAKHVQILYVGPTLLTRTGHTLLKYDLSAAHNPCPSLIHSLFFTQFLTTLSGCVKMGAGGRTSVPPSNRKSESDTIKRVPFEKPPFTLSQIKKAIPPHCFKRSVLRSFSYVVYDLTIAFCLYYVATHYFHHLPRPLSLLAWPLYWAVQGCILTGVWVIAHECGHHAFSDYQLLDDIVGLLLHSFLLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSSMKWYSKYLNNPPGRVITLAITLTLGWPLYLAFNVSGRPYERFACHYDPYGPIYSDRERLQIYISDAGVLAVCYGLFHLAMANGLAWVLCVYGVPLLVVNGFLVLITYLQHTHPALPHYNSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGDYYRLDQTPFIKAMWREAKECIYVEPDQSTENKGVFWYNNKL 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02027 446 Pfam Fatty acid desaturase 148 409 IPR005804 GO:0006629
Cca03g02027 446 CDD Delta12-FADS-like 110 392 - -
Cca03g02027 446 Pfam Domain of unknown function (DUF3474) 89 129 IPR021863 GO:0016717
Cca03g02027 446 PANTHER OMEGA-6 FATTY ACID DESATURASE, CHLOROPLASTIC 64 446 - -
Cca03g02027 446 PANTHER OLEATE HYDROXYLASE FAH12 64 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02027 Cca-Chr3 40435149 40438459 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02027 64 446 Lipid Metabolism Gene Families AT3G12120 78.068 0.0 648
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02027 K10256 - gmx:547815 763.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02027 03 40435149 40438459 Cca03g02027 03 40435149 40438459 ECH
Cca03g02027 03 40435149 40438459 Cca02g00743 02 18306704 18308647 PCT