Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01999 ATGGGTTTGGATTTGATCTTTTGGCTTGTGATTTGTTTCCCTCTCAACGTTGCCTTTTTAGCCTCAGCGTTCTACCAGGTTTTGATCTTGTCTGACTTGGAATCCGACTTTGTCAACCCGTATGATGCTTCATCTCGGATTAATTACTTCATCCTTCCTGAGTTTATTGGGCAAGGGCTATTTTGCGCTCTCTGCCTTTTCACAGGTCATTGGATCATGTTCTTGCTGACGGTTCCTGTTACATGCTATCATGTGATGCTGTACATGAAACGACAGCATCTCATTGATGTTACTGAAGTTTTTAGGGTACTTAATGCAGAGAAGAAATTTCGGATTGCCAAACTTGCTTATTACTTAACAATCATCATTATAACTGTCTTCAGGCTTGTATTGATGGGTGTCTACTATTTAGATTCTGAAGATGAATGA 429 0.3986 MGLDLIFWLVICFPLNVAFLASAFYQVLILSDLESDFVNPYDASSRINYFILPEFIGQGLFCALCLFTGHWIMFLLTVPVTCYHVMLYMKRQHLIDVTEVFRVLNAEKKFRIAKLAYYLTIIIITVFRLVLMGVYYLDSEDE 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01999 142 PANTHER PROTEIN CORNICHON 3 131 - -
Cca03g01999 142 SMART Cornichon_2 6 127 IPR003377 GO:0016192
Cca03g01999 142 PANTHER CORNICHON-RELATED 3 131 - -
Cca03g01999 142 Pfam Cornichon protein 7 127 IPR003377 GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01999 Cca-Chr3 40110947 40115338 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01999 K20368 - gmx:100527262 257.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01999 03 40110947 40115338 Cca03g01999 03 40110947 40115338 ECH
Cca03g01999 03 40110947 40115338 Cca02g00783 02 20927874 20943294 PCT