Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01972 ATGGGAGAAGCACCGGCATTGCTTGTTGATGACATTCAGGGTGGGGCTCTGAATGGCCTGGAATTGAAAAACGGAACTTGCAAAACAACTGCTACGGTTGGTGATAAGACGTATGTCATTGGTGGATCTGATGATGGAACTTTGTCCATTGAAGTTCAAATTTTTGACCCTAGTCTTGGAGAATGGGTTCGTCCCACTGTGAGGGGCACCAAACCCACGTCATGCAAAGGCCTCTCAGCAGTGCCTTTGGAAGACAGAATACTAATTCTTAAGAAGGGTTCCAAGTCAGATGATCAAATATGGTTCCTGGAGGTTGACACCGAATATGTTAGGCAGCAGCAAAAATCTTTGGGGACTGAGGTGGTTGCCTGGAGTAAAGGTGTGATAGGCAATGCTGAGAAGCCTGTTGTTATTAGTGGTCCTTCTGGAGTGGGTAAAGGAACATTGATATCAATGCTCATGAAGGAATTCCCATCTATGTTTGGTTTTTCTGTAAGCCACACCACGCGTGCCCCGAGAGGAATGGAAAAAGATGGTGTCCATTACCATTTTACAGAGAAGAGTATAATGGAGAAAGAGATCAAGGAGGGAAAGTTTCTTGAGTTTGCTTTAGTCCATGGTAATCTGTATGGAACTAGTGTTGAGGCTGTTGAACAGGTTGCAGATGCAGGGAAAAGATGTATTCTCGATATTGATGTTCAAGGGGCAAGATCTGTGAGGGCTAGTTCTCTTGAAGCCATATTCATCTTTATCTGTCCCCCGTCAATGGAGGAACTGGAGAAGCGCCTTCGTGACCGAGGTACCGAGACTGAGGAACAGATCCTGAAGCGACTAAATAACGCCAAGGCTGAGATTGAGCAAGGGGAATCTTCTCACGTATTTGATTTCATCCTATACAATGACAAACTTGAGGAGTGCTATGAGAGTCTTAAGAAACTATTGGGACTTGATGGTTTTGTCACTGCTCCACCTAAATCAGGCCATAATAGAGAGATTGATCTACCAATGGACCATTCAGTGTCAAAAATTGAAAACAAAATCATCATAAACTGCATCTCCTCAGGAGAGAAGGAATCAAAGAATTTGATCATCTTGGATGTTTCCTCACTAAAAGGGGGTGCACCTGGACGGACTAGAGGGCTAAATTTCCAAACCATTGGCTCGTTTTCGAACGGCTTGAACGGGATAGACCAGCTTAGCTAA 1203 0.4431 MGEAPALLVDDIQGGALNGLELKNGTCKTTATVGDKTYVIGGSDDGTLSIEVQIFDPSLGEWVRPTVRGTKPTSCKGLSAVPLEDRILILKKGSKSDDQIWFLEVDTEYVRQQQKSLGTEVVAWSKGVIGNAEKPVVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRGMEKDGVHYHFTEKSIMEKEIKEGKFLEFALVHGNLYGTSVEAVEQVADAGKRCILDIDVQGARSVRASSLEAIFIFICPPSMEELEKRLRDRGTETEEQILKRLNNAKAEIEQGESSHVFDFILYNDKLEECYESLKKLLGLDGFVTAPPKSGHNREIDLPMDHSVSKIENKIIINCISSGEKESKNLIILDVSSLKGGAPGRTRGLNFQTIGSFSNGLNGIDQLS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01972 400 SUPERFAMILY Galactose oxidase, central domain 26 112 IPR011043 -
Cca03g01972 400 TIGRFAM guanyl_kin: guanylate kinase 134 314 IPR017665 GO:0004385|GO:0006163
Cca03g01972 400 PANTHER GUANYLATE KINASE-RELATED 1 327 - -
Cca03g01972 400 Coils Coil 271 291 - -
Cca03g01972 400 Pfam Kelch motif 27 64 IPR006652 GO:0005515
Cca03g01972 400 ProSiteProfiles Guanylate kinase-like domain profile. 133 315 IPR008144 -
Cca03g01972 400 SMART gk_7 132 318 IPR008145 -
Cca03g01972 400 ProSitePatterns Guanylate kinase-like signature. 168 185 IPR020590 -
Cca03g01972 400 Gene3D - 24 123 IPR015915 GO:0005515
Cca03g01972 400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 314 IPR027417 -
Cca03g01972 400 Pfam Guanylate kinase 133 314 IPR008145 -
Cca03g01972 400 PANTHER TIGHT JUNCTION PROTEIN ZO-3-RELATED 1 327 - -
Cca03g01972 400 Hamap Guanylate kinase [gmk]. 131 318 IPR017665 GO:0004385|GO:0006163
Cca03g01972 400 CDD GMPK 135 311 - -
Cca03g01972 400 Gene3D - 129 317 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01972 Cca-Chr3 39685302 39690326 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01972 K00942 - gmx:100808931 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01972 03 39685302 39690326 Cca03g01972 03 39685302 39690326 ECH
Cca03g01972 03 39685302 39690326 Cca02g00422 02 8784731 8788616 PCT