Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00422 ATGGGAGAAGCACCTGTTTTCATTGTTCAAGACCTGCAGAAAGGAAGTAGCAATGGCCTTGAATCAAAAAGTGGGGCTTTGGAAACTGCTACTATCGTTGGTGATAAAAAGTTTGTCATTGGTGGAACCGAGGGTGAAACATTTTCTGTTAAAGTTCAAATTCTTGGAGAATGGGTTAATGTCGTTGAGCTAGGCACCAAACCCATTTCATGTAATGGCCACTCAGCTGTGCTTCTGAAAGACCGAATACTAATTCTCAAGAAAAATTCTAAGCCAGATGATTGTATATGGTTTTTGGAGGTAGACACTCAATATGTAAGGATGCAGAAGAAGCTTTTGGGGACCGAGGTTGTAGCATGGAGTAAGGGTGTGATGGGAAATGCTGAGAAACCTGTTATTATCAGTGGTCCTTCTGGAGTAGGTAAAGGAACATTGATATCAATGCTCATGAAGGAATTTCCCTCTATGTTTGGTTTCTCTGTGAGCCACACAACCCGTGCACCAAGAAGCATGGAGAAAGATGGGGTCCATTACCATTTTACTCAGAAAAGTGTTATGGAGAAAGAAATTAAAGATGGAAAGTTTCTGGAGTTTGCTTCTGTCCATGGTAATCTTTATGGGACCAGTGTTGAGGCTGTGGAGCTGGTATCAGATGCCGGGAAAAGATGTATTCTTGATATTGATGTTCAAGGGGCAAGATCTGTGAGGGCTAGTTCTCTAGAAGCCATGTTCATCTTTGTCTGCCCCCCATCAATGGAAGAGCTGGAGAAGCGTCTTCGTGACCGAGGGACAGAGACAGAAGAACAGGTCCTAAAGCGGTTACGAAATGCTCAGAATGAGATTGAGCAAGGGAAGTCATCAGGCATATTTGATCACATCTTATACAATGACAAACTTGAGGAGTGTTATGTGTCTCTGAAGAAATTATTGGGACTTCATGGTTGTGTCACTCCTCCTCCCAAGTCAGCACCAAAAGAGATCATCAAAATCCCAAAAGATCATTCAGTCTCAAAAATTGATGACAAAATCATCATAAACTGCATCTCTTCAGAACTACAAAAGGAATCAAAGAACTTGATCATGTTAGATGTCTTCTCACTTAAAGGGGGTGCACCTGGACGAACAAGAGGACTTGATTTTAAAGTCATTGACTCGTTTTCAAATGGCAATAGGAATGGACCAATGTGA 1188 0.4175 MGEAPVFIVQDLQKGSSNGLESKSGALETATIVGDKKFVIGGTEGETFSVKVQILGEWVNVVELGTKPISCNGHSAVLLKDRILILKKNSKPDDCIWFLEVDTQYVRMQKKLLGTEVVAWSKGVMGNAEKPVIISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRSMEKDGVHYHFTQKSVMEKEIKDGKFLEFASVHGNLYGTSVEAVELVSDAGKRCILDIDVQGARSVRASSLEAMFIFVCPPSMEELEKRLRDRGTETEEQVLKRLRNAQNEIEQGKSSGIFDHILYNDKLEECYVSLKKLLGLHGCVTPPPKSAPKEIIKIPKDHSVSKIDDKIIINCISSELQKESKNLIMLDVFSLKGGAPGRTRGLDFKVIDSFSNGNRNGPM 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00422 395 CDD GMPK 131 250 - -
Cca02g00422 395 Pfam Guanylate kinase 129 310 IPR008145 -
Cca02g00422 395 Coils Coil 267 287 - -
Cca02g00422 395 ProSiteProfiles Guanylate kinase-like domain profile. 129 311 IPR008144 -
Cca02g00422 395 Gene3D - 132 305 IPR027417 -
Cca02g00422 395 PANTHER TIGHT JUNCTION PROTEIN ZO-3-RELATED 1 339 - -
Cca02g00422 395 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 310 IPR027417 -
Cca02g00422 395 SUPERFAMILY Galactose oxidase, central domain 29 105 IPR011043 -
Cca02g00422 395 TIGRFAM guanyl_kin: guanylate kinase 130 310 IPR017665 GO:0004385|GO:0006163
Cca02g00422 395 Gene3D Guanylate Kinase phosphate binding domain 161 220 - -
Cca02g00422 395 ProSitePatterns Guanylate kinase-like signature. 164 181 IPR020590 -
Cca02g00422 395 SMART gk_7 128 314 IPR008145 -
Cca02g00422 395 PANTHER GUANYLATE KINASE-RELATED 1 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00422 Cca-Chr2 8784731 8788616 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00422 K00942 - gmx:100812658 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00422 02 8784731 8788616 Cca02g00422 02 8784731 8788616 ECH
Cca03g01972 03 39685302 39690326 Cca02g00422 02 8784731 8788616 PCT