Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01971 ATGTTGAGCCACACCAACACCAGCAGCGACCAAGAAGATGAACACGTCACCGACATCAGGGAAATCCACGCCCTGACCCCGCCGCGCCCTCCGCCGCCACGTGGTCGCTGGGAAACGCTCCACAGCCACCGCTCCTCCTCTCTCTCCGAAGGCGCCTCCTCCAGCGACAACTTCACCTCCATGAGCCGGGAATTCAACGCCTTGGTCCTCGCGGGCTCCAACATCGACCACGACAACAACGTTGTCAGTCCCATCAACGACGGAACCAACGCCGCCAACAACAACTTGACGAGGATCAGAGAGGAGGAGTTGATGGAAGAGAGCAACCCTTTGGCCATCGTACCCGATAGCCACCCTCTGGAGCCGCTTCCGTCGTCCCACGCTGGTGGTGGGACACGTGGCGCCGAGGAACACGTGTCGGTGCAGAGGGTGAAGAAGGAGGAGGTGGATGCCAAGATATCGGCATGGCAGAACGCCAAGGTTGCTAAGGTTAACAACAGGTTCAAGAGAGAAGACGCTGTCATCAATGGGTGGGAGAGCGAGCAGGTTCAGAAAGCTTCCTCGTGGATGAAGAAAGTCGAGAGGAAGCTGGAGGAGAAAAGGGCAAGAGCGATGGAGAAAATGCAAAACGACATAGCAAAAGCTCATAGAAAAGCAGAGGAGAGAAGAGCATCAGCAGAGGCAAAAAGGGGAACCAAAGTGGCAAGGGTTTTGGAGATTGCTAGTCTCATGAGAGCAGTTGGAAGACCACCTTCCAAAAAATCCTTCTTCTAA 774 0.5543 MLSHTNTSSDQEDEHVTDIREIHALTPPRPPPPRGRWETLHSHRSSSLSEGASSSDNFTSMSREFNALVLAGSNIDHDNNVVSPINDGTNAANNNLTRIREEELMEESNPLAIVPDSHPLEPLPSSHAGGGTRGAEEHVSVQRVKKEEVDAKISAWQNAKVAKVNNRFKREDAVINGWESEQVQKASSWMKKVERKLEEKRARAMEKMQNDIAKAHRKAEERRASAEAKRGTKVARVLEIASLMRAVGRPPSKKSFF 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01971 257 Pfam Remorin, C-terminal region 148 253 IPR005516 -
Cca03g01971 257 MobiDBLite consensus disorder prediction 1 57 - -
Cca03g01971 257 Coils Coil 190 225 - -
Cca03g01971 257 PANTHER OS02G0116800 PROTEIN 13 256 - -
Cca03g01971 257 MobiDBLite consensus disorder prediction 8 22 - -
Cca03g01971 257 MobiDBLite consensus disorder prediction 201 231 - -
Cca03g01971 257 PANTHER - 13 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01971 Cca-Chr3 39660575 39663905 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01971 - - gmx:100527684 362.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01971 03 39660575 39663905 Cca03g01971 03 39660575 39663905 ECH
Cca03g01971 03 39660575 39663905 Cca02g00420 02 8757836 8760498 PCT