Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00420 ATGTTGAATGATCAAACTCAAACATCTTCTACAAGCCATGATGCCATAGAGGAAGAAAACACTGATACTAGCAATGAGCAACAAGTAAGAGAAATCCACGCCTTAACCCCAAGAAGAGAGCCTAATTGGGAAACACACAGCCACCAACCTTCTTCTGTTTCCACTGAGAACTTCAGCATGAGTAGGGAATTCAGTGCCCTCGTTCTGGCAGGCTCAAGCATCGACCATAGTCCCTTGAGTGTCATGCATGGCAATGAAGGGGGTGTTAATAGTAATAGcaacaacactaacaacaacaacaacTTGAACTTGGGGAGGATTGGTGAGGATGATGAGTTGTTGATGATGGAAGAGACTAACCCTTTGGCGATTGTGGCAGATAGAAACCCTTTGGAGGAGGTTTCGGCTTCTAGGGGTGGAGGGTCTTCTTCTAGTGGTGGTGAGGTGACACTGCAGAGGGTGAGGAAGGAGGAGGTTGAGGCAAAGATTGCGGCTTGGCAAACTGCTAAGGTTGCCAAGATCAATAACAGGTTCAAGAGGGAAGATGCTGTTATAAATGGCTGGGAGAATGAGCAGGTTCAGAAAGCAACTTCATGGATGAAGAAAATTGAGAGAAAGCTAGAGGATAAAAGAGCAAAAGCAATGGAGAAAATGCAAAATGAGGTAGCAAAAGCTCATAGAAAAGCTGAGGAGAGAAGGGCATCAGCAGAGGCTAAAAGGGGAACTAAAGTAGCCAGGGTTCTGGAGATTGCAAACCTTATGAGAGCAGTTGGAAGAGCACCAACCAAAAGATCTTTCTTTTAA 804 0.4378 MLNDQTQTSSTSHDAIEEENTDTSNEQQVREIHALTPRREPNWETHSHQPSSVSTENFSMSREFSALVLAGSSIDHSPLSVMHGNEGGVNSNSNNTNNNNNLNLGRIGEDDELLMMEETNPLAIVADRNPLEEVSASRGGGSSSSGGEVTLQRVRKEEVEAKIAAWQTAKVAKINNRFKREDAVINGWENEQVQKATSWMKKIERKLEDKRAKAMEKMQNEVAKAHRKAEERRASAEAKRGTKVARVLEIANLMRAVGRAPTKRSFF 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00420 267 PANTHER CARBOXY-TERMINAL REGION REMORIN 7 266 - -
Cca02g00420 267 Pfam Remorin, C-terminal region 158 263 IPR005516 -
Cca02g00420 267 MobiDBLite consensus disorder prediction 1 57 - -
Cca02g00420 267 MobiDBLite consensus disorder prediction 15 45 - -
Cca02g00420 267 MobiDBLite consensus disorder prediction 218 238 - -
Cca02g00420 267 Coils Coil 200 239 - -
Cca02g00420 267 PANTHER OS02G0116800 PROTEIN 7 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00420 Cca-Chr2 8757836 8760498 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00420 - - gmx:100784687 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00420 02 8757836 8760498 Cca02g00420 02 8757836 8760498 ECH
Cca03g01971 03 39660575 39663905 Cca02g00420 02 8757836 8760498 PCT