Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01966 ATGGCCCTCCTCAAACACCTCCTCCTCTCATTCACCATTATCATCATTTCTTTTATTGCTTGTTATAGCACCTTGCAAGATCATGAGGACCCACCAAGTAGTATATATGTTCATGATCATTCATCTTCCATTGATGATGGTGGGGCATTCAATAACCTCATCAAGCAAAGCACAAATATTTTGAGCTTAGATATTTACAATAAGTTGGGTAATATTCCTCGCTCATCACTTAAAATGGTTAATGTCAATGATTATGGAGCCAAAGGGAATGGTCACACTGATGACACAGAGGCTTTCAAGAAGGCTTGGGAAGAAGTATGTTCTTCTGGGGAAGCAATTCTTGTGGTGCCTGAGGAGAATAGTTATATGCTCAAACCAATCAGATTCTCTGGTCCTTGCGAACCTAACATTCAAGTCCAGTTTTCTGGAACCCTTGAAGCATCAGATGATCCATCAGATTACAGCGAAGACTGTAGACACTGGCTTTTGTTTGAGAATATTAAGAAACTATATGTTTCTGGTTGGGGAACCATCAATGGAAACGGCAACATATGGTGGCAAAACTCATGCAAAAGAAACAAAAAGCGCCCTTGCAAGGATGCCCCGACGGCTCTAACTTTCTATGGTTGCGATGACTTAATAGTTGAGAACTTGACGATAGAAAATGCTCAACAAATCCACGTTTCGTTCCAGGATTCCGTGAATGTTAAGGTTTCTGGCCTTAACGTGACCTCACCAGAGGATAGCCCCAACACCGATGGGATTCATGTCACCAATACGCAAAACATCCAAATCTCAAACTCTGTTATAGGAACTGGTGATGATTGTATATCTATAGTACATGGATCTAGAAATGTAGAAGCCATAAACATAACTTGCGGACCCGGACATGGTATCAGTATTGGAAGCTTAGGCGCGGGAAAATCCAAGGAAATTGTTTCAGGAATACTAGTGAATGGAGCCAAGATTTTTGGAACTAAAAATGGAGTTAGAATCAAGACATGGCAGGGAGGTTCAGGAAGTGCTAGCAACATCCAGTTTCAGAACATTGAAATGGACAACGTGACCAACCCCATAATAATAAATCAGAATTACTGTGACAAGAAAAAGAAGCCCTGCAATAAGCGGCTCTTGCAGAAATCCGATGTTCAAATAAAGAATGTGGTGTACCAGAACATAAAAGGCACAAGTGCTTCTGATGTAGCTGTGAAGTTTGATTGCAGCGACAAGTTTCCATGCCAGGAGATAACATTGCAGAACATAGACCTTGAATGTGAAGGAGGAGAAGATGCTGAGGCTTTCTGCAACAATGTTGAATTGTCTTACTTAGGACACGTTCGCCCTCGTTGCAACTCGGAAAACGGAAAAGCATCTACCATGTTCACTTCCATATGGAAAGACTACTTATGA 1410 0.4135 MALLKHLLLSFTIIIISFIACYSTLQDHEDPPSSIYVHDHSSSIDDGGAFNNLIKQSTNILSLDIYNKLGNIPRSSLKMVNVNDYGAKGNGHTDDTEAFKKAWEEVCSSGEAILVVPEENSYMLKPIRFSGPCEPNIQVQFSGTLEASDDPSDYSEDCRHWLLFENIKKLYVSGWGTINGNGNIWWQNSCKRNKKRPCKDAPTALTFYGCDDLIVENLTIENAQQIHVSFQDSVNVKVSGLNVTSPEDSPNTDGIHVTNTQNIQISNSVIGTGDDCISIVHGSRNVEAINITCGPGHGISIGSLGAGKSKEIVSGILVNGAKIFGTKNGVRIKTWQGGSGSASNIQFQNIEMDNVTNPIIINQNYCDKKKKPCNKRLLQKSDVQIKNVVYQNIKGTSASDVAVKFDCSDKFPCQEITLQNIDLECEGGEDAEAFCNNVELSYLGHVRPRCNSENGKASTMFTSIWKDYL 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01966 469 SUPERFAMILY Pectin lyase-like 72 452 IPR011050 -
Cca03g01966 469 SMART pbh1 260 281 IPR006626 -
Cca03g01966 469 SMART pbh1 210 230 IPR006626 -
Cca03g01966 469 SMART pbh1 313 334 IPR006626 -
Cca03g01966 469 SMART pbh1 233 259 IPR006626 -
Cca03g01966 469 SMART pbh1 342 363 IPR006626 -
Cca03g01966 469 ProSitePatterns Polygalacturonase active site. 290 303 IPR000743 GO:0004650|GO:0005975
Cca03g01966 469 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Cca03g01966 469 Gene3D - 71 466 IPR012334 -
Cca03g01966 469 PANTHER ENDO POLYGALACTURONASE 7 456 - -
Cca03g01966 469 PANTHER - 7 456 - -
Cca03g01966 469 Pfam Glycosyl hydrolases family 28 113 439 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01966 Cca-Chr3 39594075 39598016 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01966 65 450 Glycoside Hydrolase AT3G07970 55.527 3.76e-144 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01966 K01184 - gmx:100797601 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01966 03 39594075 39598016 Cca03g01966 03 39594075 39598016 ECH
Cca02g00414 02 8652435 8657809 Cca03g01966 03 39594075 39598016 PCT