Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00414 ATGGCCCTCCAAAGACACCACCTTGCACTCCTTGTCATCATGATTTCTTTTGTTGCTAGTCATGGCACCGTGCTAAAAGAACCACTTGGTTTATTTGATGATGATTCTTCTTACGTCGATGATGGTGGCACGTTCAGGGACTTTATTATCAAGCAGAATGAAGATGTTTTGACCTTAAAGAGTTTTGACAACTTGGGTCACAATTCTAGATCTCCTTCGCTTAAAACGGTTAACGTTAATGATTATGGAGCTAAAGGAGATGGTAAAACCGATGACACTCAGGCATTCTATAAGGCTTGGCAGGTAGCATGTTCTTCTTCAGCAGCAGTTATTGTGGTGCCTCAGAAGAACTATCTACTCAAGCCAATCACATTTTCTGGCCCTTGCAAATCCAACATCGCAGTTCAGATTTCCGGAACCCTTGAAGCCTCAGGTAACCCATCAGATTACAGCAAAGACCGCACACACTGGCTTATGTTCGATAATGTTCACAAACTATCAGTTAAAGGTGGTGGAACCATCGATGGGAATGGTAACATATGGTGGAAAAACTCATGCAAAACGAACAAAAAACTTCCTTGCAAGGATGCCCCCACGGCGTTGACTTTCCACAAGTGCAATAACTTGGTAGTTGAGGATTTGACGATAAAAAATGGCCAACAAATTCATGTTTCATTCCAAGACTCCGTGAATGTTAAAGTTTCCAGTCTCACTGTGACAGCACCGGAGAACAGCCCAAACACCGATGGAATTCATGTCACAAACACCCAAAACATCCAAATCTCTAGCTCCGTTATAGGAACTGGTGATGATTGTATATCAATTGTAAGCGGGTCCAGGAATCTGCTAGCCACAAACATAACCTGCGGACCAGGCCATGGTATCAGCATCGGAAGCTTAGGGGCCGAGGAATCCAAGGAATTTGTTTCAGGAGTAACGGTGAATGGGGCAAAGTTTTCTGGGACTACAAATGGAGTAAGAATTAAGACATGGCAGGGAGGGTCCGGAAGTGCAAACAGAATTCAGTTTCAGAACATTCAGATGGACAACGTGACCAATCCCATAATAATAGATCAAAACTACTGTGATCAAGCGACACCTTGCACAAAACAACAATCTGCAGTTCAGATTAGGAATGTGTTGTACCAAAACATAAAAGGCACAAGTGCTTCCGATGTGGGAGTGCAATTTGATTGCAGCAAGAACTTTCCATGCCAGGGAATAGTGTTGCAGAACATAAACCTGCAACTTGAAGGTGGAGGAAAAGCCAAGGCTTCATGCAACAATGTTAAATTGACCTACAAAGGAGATGTTGACCCTCACTGCCCATAG 1332 0.4332 MALQRHHLALLVIMISFVASHGTVLKEPLGLFDDDSSYVDDGGTFRDFIIKQNEDVLTLKSFDNLGHNSRSPSLKTVNVNDYGAKGDGKTDDTQAFYKAWQVACSSSAAVIVVPQKNYLLKPITFSGPCKSNIAVQISGTLEASGNPSDYSKDRTHWLMFDNVHKLSVKGGGTIDGNGNIWWKNSCKTNKKLPCKDAPTALTFHKCNNLVVEDLTIKNGQQIHVSFQDSVNVKVSSLTVTAPENSPNTDGIHVTNTQNIQISSSVIGTGDDCISIVSGSRNLLATNITCGPGHGISIGSLGAEESKEFVSGVTVNGAKFSGTTNGVRIKTWQGGSGSANRIQFQNIQMDNVTNPIIIDQNYCDQATPCTKQQSAVQIRNVLYQNIKGTSASDVGVQFDCSKNFPCQGIVLQNINLQLEGGGKAKASCNNVKLTYKGDVDPHCP 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00414 443 PANTHER - 9 442 - -
Cca02g00414 443 PANTHER ENDO POLYGALACTURONASE 9 442 - -
Cca02g00414 443 Pfam Glycosyl hydrolases family 28 108 432 IPR000743 GO:0004650|GO:0005975
Cca02g00414 443 Gene3D - 62 439 IPR012334 -
Cca02g00414 443 SMART pbh1 278 299 IPR006626 -
Cca02g00414 443 SMART pbh1 206 226 IPR006626 -
Cca02g00414 443 SMART pbh1 256 277 IPR006626 -
Cca02g00414 443 SMART pbh1 338 359 IPR006626 -
Cca02g00414 443 SMART pbh1 229 255 IPR006626 -
Cca02g00414 443 SMART pbh1 309 330 IPR006626 -
Cca02g00414 443 ProSitePatterns Polygalacturonase active site. 286 299 IPR000743 GO:0004650|GO:0005975
Cca02g00414 443 SUPERFAMILY Pectin lyase-like 72 442 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00414 Cca-Chr2 8652435 8657809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00414 47 442 Glycoside Hydrolase AT2G41850 60.250 1.32e-159 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00414 K01184 - gmx:100816917 687.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00414 02 8652435 8657809 Cca02g00414 02 8652435 8657809 ECH
Cca02g00414 02 8652435 8657809 Cca03g01966 03 39594075 39598016 PCT