Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00398 ATGGCTTCTCTAGTATCATCCCCATTTACCATACCCAGTTCTAAGAAACTTTCTTCTCTTGCCCAAAGACACCTTTTTCTTCATTCTTTTCTTCCCAAGAAGGCCAATTGCTATGGCAGCAACTCAAAGGCTTCCCTGAGAGTGAAATGTGCTGCAATTGGGAATGGCCTTTTCACCCAAACCACCCAAGAAGTGCGTAGGATAGTTCCTGACAACAACCAAAACCTGCCAACGGTTAAAATTGTGTACGTTGTGCTTGAAGCTCAGTACCAATCATCTCTCTCTGCTGCTGTTAGAGCCCTCAACAGCACCAACAAAGATGCAGCCTTTGAAGTTGTGGGGTACTTGGTTGAGGAGCTTCGCGATGAGTCCACTTACAAGACCTTCTGCAAGGACTTGGAAGATGCCAACATCTTCATTGGGTCACTGATTTTTGTGGAGGAGCTTGCGCTCAAGGTTAAAGCTGCAGTGGAGAAAGAAAGGGACAGGCTTGATGCGGTTTTGGTGTTCCCATCAATGCCTGAGGTAATGAGGCTGAACAAGTTGGGATCTTTCAGCATGTCACAGCTTGGACAATCCAAGAGCCCCTTTTTCCAGCTTTTCAAGAAGAAGAAGCAGTCTTCTGCAGGGTTTGCTGATAGCATGTTGAAGCTGGTGAGGACTTTGCCAAAGGTTTTGAAGTACTTGCCAAGTGACAAGGCTCAGGATGCTAGGCTCTACATTCTGAGCCTGCAGTTTTGGCTCGGTGGATCGCCTGATAACTTGCAGAACTTCCTCAAGATGGTTTCTGGCTCGTATGTTCCGGCGTTGAAAGGGACAAAGATGGAGTATTCGGAGCCGGTTTTATACTTGGACACTGGAATTTGGCACCCTCTAGCCCCTTGTATGTATGATGATGTGAAGGAGTATTTGAATTGGTATGGAACAAGAAGGGATGCTAATGAGAATTTGAAGAGTCCGAATGCGCCGGTGGTTGGACTGATTTTGCAGAGGAGTCACATTGTGACTGGTGATGATGGCCACTATGTGGCTGTGATCATGGAGCTTGAGGCTAGAGGTGCCAAGGTTATTCCGATTTTTGCCGGAGGGCTTGATTTTTCGGGGCCAGTAGAGAGGTTCTTGATTGATCCAATCACTAAGAAGCCTTTTGTGAATTCTGTGGTGTCACTCACTGGCTTTGCACTTGTTGGAGGCCCTGCAAGGCAGGACCATCCAAGGGCAATTGAGGCTTTGATGAGGCTAGATGTTCCTTACATTGTTGCATTACCATTGGTGTTCCAGACTACAGAAGAGTGGCTGAACAGTACTTTGGGTTTGCATCCAATTCAGGTTGCTCTTCAAGTTGCATTGCCTGAGCTAGATGGTGGCATGGAGCCTATAGTTTTTGCTGGCCGGGATCCCAAAACAGGAAAATCTCATGCTCTTCACAAGAGAGTGGAGCAGCTGTGCACTAGGGCAATAAAATGGGGAGAATTGAAAAGGAAAACAAAGGAAGAGAAGAAACTAGCAATCACTGTCTTCAGTTTCCCACCAGACAAAGGCAATGTAGGAACTGCAGCCTACCTGAACGTCTTCTCCTCCATTTTCTCTGTTCTAAAAGATCTTCAAAGAGATGGTTACAATGTTGAGGGACTTCCAGAAACTTCAGAAGCTTTGATTGAAGAAGTAATACATGACAAAGAAGCACAATTCAGCAGCCCCAATCTAAACGTTGCTTACAAAATGAGTGTCCGCGAATACCAAAGTCTAACTCCCTATGCCACAGCATTAGAAGAAAACTGGGGAAAGCCTCCTGGAAATCTGAATTCAGATGGAGAGAATCTATTGGTATATGGGAAACAATATGGTAATGTATTCATAGGTGTTCAACCTACATTTGGCTATGAAGGCGATCCTATGCGGTTGCTTTTCTCCAAATCTGCAAGTCCACATCATGGATTTGCAGCATATTACTCTTTTGTCGAGAAAATTTTCAAAGCTGATGCTGTTCTTCATTTTGGAACACATGGTTCCCTTGAATTTATGCCTGGAAAGCAGGTAGGAATGAGTGATGTATGTTATCCAGATAGTCTGATTGGGAATATTCCTAATGTCTATTACTATGCTGCAAACAACCCTTCGGAGGCTACCATTGCAAAACGTAGGAGCTATGCAAATACCATTAGCTATCTGACTCCTCCAGCTGAAAATGCAGGACTCTACAAAGGTCTTAAGCAGTTAAGTGAGCTCATCTCCTCATACCAGTCACTCAAGGACACCGGTCGCGGGCCACAAATTGTGAGTTCAATTATCAGCACTGCTAAACAATGTAATCTTGACAAGGATGTGGAGCTGCCAGATGAGGGTGCTGAGATCCCGGCTAAAGAGCGCGACCTTGTAGTTGGAAAGGTGTATGCCAAGATCATGGAGATTGAGTCGCGCCTGTTGCCTTGTGGACTCCATGTCATTGGTGAGCCACCTTCAGCATTGGAAGCAGTTGCAACACTGGTGAACATAGCTGCACTTGATCGTCCTGAAGATGGTATTTCCTCTCTCCCAGCTATACTAGCTGAGACTGTAGGAAGAAGCATAGAGGAGGTTTATAGAGGGAGTGACAAAGGAATACTAAAGGATGTAGAACTTCTTCGGCAAATAACCGAAGCTTCACGTGGAGCAATCACTTCCTTTGTGGAGAGGACTACAAATAACAAGGGTCAAGTTGTTGATGTAGCAGATAAACTTACCTCAATCCTTGGATTTGGCATAAATGAACCATGGGTTGTTTACTTGTCAAACACCAAGTTTTACCGAGCTGATAGGGACAAACTCAGAACCTTGTTCCAGTTCTTGGGAGAATGTTTGAAGTTGGTTGTAGCTGATAATGAATTGGGAAGTTTGAAACAAGCCTTGGAGGGTAAGTATGTGGAGCCAGGACCTGGTGGTGATCCGATTAGAAATCCTAAAGTTTTGCCTACAGGGAAGAATATCCATGCATTGGACCCTCAAGCTATTCCTACTACAGCAGCAATGCAAAGTGCCAAAGTAGTTGTAGATAGATTGATTGAGAGGCAGAAAGCTGAAAACGGGGGAAAGTATCCTGAGACTATTGCACTTGTATTGTGGGGAACAGATAATATTAAGACATATGGTGAATCCCTGGCTCAGGTCTTGTGGATGATTGGTGTGATGCCAGTATCTGATACCTTTGGAAGGGTCAACCGGGTGGAACCTGTAAGCCTTGAAGAGCTTGGAAGGCCTAGGATTGATGTTGTCGTTAACTGTTCAGGAGTGTTCAGGGACCTTTTTATCAATCAGATGAATCTTCTAGATAGAGCAGTGAAGATGGTTGCCGAATTAGATGAACCAACAGAGCAAAACTATGTAAGGAAGCATGCATTGGAACAAGCTCAAGCCCTCGGGATTGACGTTCGAGAAGCCGCAACAAGGGTCTTCTCCAATGCCTCAGGGTCCTACTCCTCAAACATAAACCTGGCAGTGGAGAATTCTTCATGGAATGATGAGAAGCAGCTCCAGGACATGTACCTTAGCAGAAAGTCATTTGCTTTTGATTGCGATGCGCCTGGTGCAGGCATGACTGAGAAACGAAATGTCTTTGAGATGGCTCTGAGCACAGCAGATGCCACATTCCAAAACCTTGACTCGTCAGAAATCTCCCTCACTGATGTCAGTCATTACTTTGACTCGGATCCAACAAACCTGGTTCAAAATCTAAGGAAAGATGGGAAGAAGCCAAGTGCATACATTGCTGACACAACCACTGCTAATGCTCAGGTGCGTACCCTCGCTGAGACAGTTCGTCTTGATGCAAGAACCAAGCTATTGAACCCCAAGTGGTATGAAGGCATGTTATCAAGTGGATATGAGGGTGTTCGTGAGATTGAGAAGAGGCTAACTAACACAGTTGGGTGGAGTGCAACTTCAGGTCAAGTTGACAACTGGGTTTATGAAGAAGCCAACACAACGTTCATTCAAGATGAGGAAATGCTGAAGAAGCTCATGAACACAAATCCAAACTCCTTCAGGAAGCTTGTGCAAACATTCTTGGAGGCCAATGGACGCGGTTACTGGGAGACTTCTGAAGAAAACATTGATAAGCTCAGGCAGTTGTACTCAGAAGTAGAAGACAAAATTGAAGGCATTGATCGCTGA 4149 0.4502 MASLVSSPFTIPSSKKLSSLAQRHLFLHSFLPKKANCYGSNSKASLRVKCAAIGNGLFTQTTQEVRRIVPDNNQNLPTVKIVYVVLEAQYQSSLSAAVRALNSTNKDAAFEVVGYLVEELRDESTYKTFCKDLEDANIFIGSLIFVEELALKVKAAVEKERDRLDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFQLFKKKKQSSAGFADSMLKLVRTLPKVLKYLPSDKAQDARLYILSLQFWLGGSPDNLQNFLKMVSGSYVPALKGTKMEYSEPVLYLDTGIWHPLAPCMYDDVKEYLNWYGTRRDANENLKSPNAPVVGLILQRSHIVTGDDGHYVAVIMELEARGAKVIPIFAGGLDFSGPVERFLIDPITKKPFVNSVVSLTGFALVGGPARQDHPRAIEALMRLDVPYIVALPLVFQTTEEWLNSTLGLHPIQVALQVALPELDGGMEPIVFAGRDPKTGKSHALHKRVEQLCTRAIKWGELKRKTKEEKKLAITVFSFPPDKGNVGTAAYLNVFSSIFSVLKDLQRDGYNVEGLPETSEALIEEVIHDKEAQFSSPNLNVAYKMSVREYQSLTPYATALEENWGKPPGNLNSDGENLLVYGKQYGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYSFVEKIFKADAVLHFGTHGSLEFMPGKQVGMSDVCYPDSLIGNIPNVYYYAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQSLKDTGRGPQIVSSIISTAKQCNLDKDVELPDEGAEIPAKERDLVVGKVYAKIMEIESRLLPCGLHVIGEPPSALEAVATLVNIAALDRPEDGISSLPAILAETVGRSIEEVYRGSDKGILKDVELLRQITEASRGAITSFVERTTNNKGQVVDVADKLTSILGFGINEPWVVYLSNTKFYRADRDKLRTLFQFLGECLKLVVADNELGSLKQALEGKYVEPGPGGDPIRNPKVLPTGKNIHALDPQAIPTTAAMQSAKVVVDRLIERQKAENGGKYPETIALVLWGTDNIKTYGESLAQVLWMIGVMPVSDTFGRVNRVEPVSLEELGRPRIDVVVNCSGVFRDLFINQMNLLDRAVKMVAELDEPTEQNYVRKHALEQAQALGIDVREAATRVFSNASGSYSSNINLAVENSSWNDEKQLQDMYLSRKSFAFDCDAPGAGMTEKRNVFEMALSTADATFQNLDSSEISLTDVSHYFDSDPTNLVQNLRKDGKKPSAYIADTTTANAQVRTLAETVRLDARTKLLNPKWYEGMLSSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIQDEEMLKKLMNTNPNSFRKLVQTFLEANGRGYWETSEENIDKLRQLYSEVEDKIEGIDR 1382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00398 1382 PANTHER MAGNESIUM-CHELATASE SUBUNIT CHLH, CHLOROPLASTIC 82 1381 IPR003672 GO:0009058
Cca02g00398 1382 CDD CobN_like 155 1253 IPR003672 GO:0009058
Cca02g00398 1382 PANTHER MAGNESIUM-CHELATASE SUBUNIT CHLH, CHLOROPLASTIC 82 1381 - -
Cca02g00398 1382 Pfam Domain of unknown function (DUF3479) 80 241 IPR022571 GO:0016851
Cca02g00398 1382 Pfam CobN/Magnesium Chelatase 245 1362 IPR003672 GO:0009058
Cca02g00398 1382 TIGRFAM BchH: magnesium chelatase, H subunit 80 1380 IPR011771 GO:0015995|GO:0016851
Cca02g00398 1382 Coils Coil 1356 1382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00398 Cca-Chr2 8387357 8393639 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00398 K03403 - gmx:100806079 2645.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00398 02 8387357 8393639 Cca02g00398 02 8387357 8393639 ECH
Cca03g01952 03 39432427 39438488 Cca02g00398 02 8387357 8393639 PCT