Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01948 ATGTCTAGCGCTGCAAAAGTGTTGGATCCAGCATTCCAGGGAGTGGGTCAAAAAGTAGGGACTGAAATATGGAGGATTGAGAATTTTCAGCCAGTTCCATTACCCAGATCAGAATATGGGAAATTCTACATGGGAGATTCTTACATCATCTTACAGACAACTCAAAACAAAGGAGGCGCTTATTTGTATGATATTCACTTCTGGATTGGAAAGGATACAAGTCAGGTCCCTTTTGCACGGTCTTCGCTGAATCATGATGATGTGTTCATCCTAGATACTCAGAATAAGATTTATCAATTCAATGGTGCAAACTCCAATATTCAGGAAAGAGCCAAGGCTCTTGAAGTTATCCAGTTGTTGAAGGAAAAGTATCATGAAGGCAAATGCGAAGTTGCAATTGTTGATGATGGCAAGCTTGATACTGAGTCAGACTCGGGTGAATTTTGGGTTCTCTTTGGTGGTTTTGCTCCCATTGGAAAGAAGATAATTAGTGAGGATGATATCGTTCCAGAGACGATTCCTGCTCAACTCTATAGTATTGCTGATGGTGACGTCAAGCCTGTGGATAGTGATCTTTCAAAGTCACTGCTGGAGAACAACAAATGCTATATATTAGACTGTGGTGCTGAGGTATTTGTCTGGATTGGCCGTGTAACACAAGTTGAAGAACGAAAAGCAGCTTGTCAAGCAGCTGAGGAGTTTCTCACAAGTCAAAAAAGGCCAAAATCTACAAGGATCACCAGAATTATTCAAGGTTATGAAACACATTCATTTAAGTCCAACTTTGATTCTTGGCCATCAGGATCTTCTACTACCAGTGCTGATGAAGGAAGAGGAAAAGTTGCAGCTTTGCTGAAGCAGCAAGGTATGGGTGTCAAAGGGGTGGCAAAAAGTACCCCAGTTATTGAGGAAATTCCACCTTTGCTTGAAGGAGGCGGAAAGTTGGAGGTATGGCAAATCAATGGAAGTGCTAAGACTCCATTACCTAAGGAGGATATTGGTAAATTTTATAGTGGAGATTGTTACATAGTACTGTACACTTATCACTCTAGCGAGAGGAAGGAAGACTACTACCTGTGCTGTTGGTTTGGAAAAAAAAGCATCGAGGAAGACCAAAGGATGGCTATTCGATTGGCTAACACAATGTTCAACTCATTAAAGGGTAGACCTGTTCAGGGTTGCATATTTGATGGCAAAGAGCCACCACAGTTTATTGCTCTTTTCCAACCAATGGTGGTCCTCAAGGGAGGCTTGAGCTCAGGTTACAAAAAGTTTATATCAGATAAAGGTTTGCCAGATGAGACATACACAGCAGAGAGTGTTGCACTTATTCGAATTTCTGCAACATCCATTCATAACAATAAAGTGATGCAAGTAGATGCAGTGGCAGCTTCATTGAATTCTACTGAGTGTTTTGTCCTGCAATCTGGCTCAGCTGTTTTTACTTGGCATGGGAATCAATGTTCCCTTGAGCAGCAGCAGCTTGCAGCAAAAGTTGCTGAATTTTTAAGGCCAGGAGTTCCTTTAAAGCATGCTAAAGAAGGAACAGAAACCTCAGCTTTCTGGTTTGCAGTTGGAGGGAAACAAAGTTACACCAACAAAAAAGTCACTAATGACATTGTCCGAGACCCACATTTGTTCACTTTCTCTTTTAATAGAGGAAAGTTAAAGTTAGATGAGGTTTACAACTTTTCCCAAGATGATTTGTTAACAGAGGATATCCTCATACTTGACACGCATGCCGAAGTGTTTCTTTGGATTGGCCAGTCTGTGGACCCAAAAGAAAAGCAAAATGCTTTTGAAATTGCCCAGAAATACATAGATAAGGCTGCATCTCTGGAGGGACTATCTCCTCAAGTACCACTGTATAAAGTAACAGAAGGGAATGAACCTTGCTTTTTTACAACATACTTTTCTTGGGATCATGCAAAAGCTATGGTTCCAGGGAACTCGTTCCAGAAAAAGGTGTCATTACTATTTGGGATTGGCCATCATGTAGAGGAAAAGTCTAATGGGTCAAGTCAAGGGGGACCAAGACAGAGAGCAGAAGCTTTGGCTGCCTTAAATAATGCATTCAATTCATCTCCTGAGACAACATCCAGTCTGGGTAAGTCGAATGGGTTAAATCAAGGAGGGGCAAGACAAAGGGCTGAAGCCTTAGCAGCCTTAAACTCTGCATTTAATTCATCATCTGGAACCAAAGTTTATGCTCCTAGAGCAACTGGAAGAAGTTCAGGATCACAAAGAGCAGCAGCAGTAGCTGCACTTTCTTCAGTTCTTACTGCTGAAAAGAAGAAACCTTCACCTGAAACTGAATCTTCTCCTGTGGGAAGCAGTAGTAGTCCTGTCGTGGAAAGTAGCAACTTCGTTCCAGATACAAAAAGTGAAAGTGCCCCTTCTGAAACGGAAGCTGTTGAAGAAGTTGCAGAAGCCAAGGAGACAGAAGAAGTTGCCCCTGAAACTGGTACCAATGGGGATTCAGAACCAAAACAAGAAAATGTGCAAGATGGAAATGACAGTGAAAATAGTCAAAATTTCTTCAGTTATGAGCAATTAAAGACTAAATCTGGTAGTGTTGTGTCTGGAATTGATCTTAAACGGAGAGAGGCCTATCTGTCAGACAAAGAGTTCGAATCTGTATTTGGAATGAGCAAAGAAGCATTCTCTAAGTTGCCAAGATGGAAGCAAGACATGCTGAAAAGGAAAGTGGATTTGTTCTAG 2721 0.4146 MSSAAKVLDPAFQGVGQKVGTEIWRIENFQPVPLPRSEYGKFYMGDSYIILQTTQNKGGAYLYDIHFWIGKDTSQVPFARSSLNHDDVFILDTQNKIYQFNGANSNIQERAKALEVIQLLKEKYHEGKCEVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKIISEDDIVPETIPAQLYSIADGDVKPVDSDLSKSLLENNKCYILDCGAEVFVWIGRVTQVEERKAACQAAEEFLTSQKRPKSTRITRIIQGYETHSFKSNFDSWPSGSSTTSADEGRGKVAALLKQQGMGVKGVAKSTPVIEEIPPLLEGGGKLEVWQINGSAKTPLPKEDIGKFYSGDCYIVLYTYHSSERKEDYYLCCWFGKKSIEEDQRMAIRLANTMFNSLKGRPVQGCIFDGKEPPQFIALFQPMVVLKGGLSSGYKKFISDKGLPDETYTAESVALIRISATSIHNNKVMQVDAVAASLNSTECFVLQSGSAVFTWHGNQCSLEQQQLAAKVAEFLRPGVPLKHAKEGTETSAFWFAVGGKQSYTNKKVTNDIVRDPHLFTFSFNRGKLKLDEVYNFSQDDLLTEDILILDTHAEVFLWIGQSVDPKEKQNAFEIAQKYIDKAASLEGLSPQVPLYKVTEGNEPCFFTTYFSWDHAKAMVPGNSFQKKVSLLFGIGHHVEEKSNGSSQGGPRQRAEALAALNNAFNSSPETTSSLGKSNGLNQGGARQRAEALAALNSAFNSSSGTKVYAPRATGRSSGSQRAAAVAALSSVLTAEKKKPSPETESSPVGSSSSPVVESSNFVPDTKSESAPSETEAVEEVAEAKETEEVAPETGTNGDSEPKQENVQDGNDSENSQNFFSYEQLKTKSGSVVSGIDLKRREAYLSDKEFESVFGMSKEAFSKLPRWKQDMLKRKVDLF 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01948 906 CDD gelsolin_S3_like 175 264 - -
Cca03g01948 906 MobiDBLite consensus disorder prediction 693 715 - -
Cca03g01948 906 CDD gelsolin_S5_like 440 530 - -
Cca03g01948 906 SUPERFAMILY Actin depolymerizing proteins 303 447 - -
Cca03g01948 906 MobiDBLite consensus disorder prediction 820 849 - -
Cca03g01948 906 SUPERFAMILY Actin depolymerizing proteins 9 75 - -
Cca03g01948 906 CDD gelsolin_S2_like 75 153 - -
Cca03g01948 906 ProSiteProfiles Headpiece (HP) domain profile. 841 906 IPR003128 GO:0003779|GO:0007010
Cca03g01948 906 Pfam Gelsolin repeat 326 405 IPR007123 -
Cca03g01948 906 Pfam Gelsolin repeat 453 506 IPR007123 -
Cca03g01948 906 Pfam Gelsolin repeat 560 634 IPR007123 -
Cca03g01948 906 Pfam Gelsolin repeat 185 258 IPR007123 -
Cca03g01948 906 Pfam Gelsolin repeat 75 138 IPR007123 -
Cca03g01948 906 Gene3D Villin headpiece domain 828 906 IPR036886 GO:0003779|GO:0007010
Cca03g01948 906 SMART VILL_6 544 640 IPR007122 GO:0051015
Cca03g01948 906 SMART VILL_6 313 411 IPR007122 GO:0051015
Cca03g01948 906 SMART VILL_6 173 265 IPR007122 GO:0051015
Cca03g01948 906 SMART VILL_6 19 155 IPR007122 GO:0051015
Cca03g01948 906 SMART VILL_6 441 528 IPR007122 GO:0051015
Cca03g01948 906 SUPERFAMILY Actin depolymerizing proteins 517 639 - -
Cca03g01948 906 Gene3D Severin 310 438 IPR029006 -
Cca03g01948 906 PANTHER VILLIN-3-LIKE ISOFORM X1 75 906 - -
Cca03g01948 906 Pfam Villin headpiece domain 871 906 IPR003128 GO:0003779|GO:0007010
Cca03g01948 906 MobiDBLite consensus disorder prediction 799 819 - -
Cca03g01948 906 CDD gelsolin_S6_like 543 641 - -
Cca03g01948 906 Gene3D Severin 439 534 IPR029006 -
Cca03g01948 906 MobiDBLite consensus disorder prediction 759 849 - -
Cca03g01948 906 MobiDBLite consensus disorder prediction 693 712 - -
Cca03g01948 906 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 62 155 IPR036180 -
Cca03g01948 906 PANTHER VILLIN 1 75 IPR007122 GO:0051015
Cca03g01948 906 PANTHER VILLIN 75 906 IPR007122 GO:0051015
Cca03g01948 906 Gene3D Severin 169 280 IPR029006 -
Cca03g01948 906 Gene3D Severin 6 165 IPR029006 -
Cca03g01948 906 MobiDBLite consensus disorder prediction 730 749 - -
Cca03g01948 906 SUPERFAMILY Actin depolymerizing proteins 144 266 - -
Cca03g01948 906 Gene3D Severin 537 654 IPR029006 -
Cca03g01948 906 PANTHER VILLIN-3-LIKE ISOFORM X1 1 75 - -
Cca03g01948 906 SMART VHP_1 871 906 IPR003128 GO:0003779|GO:0007010
Cca03g01948 906 PRINTS Gelsolin family signature 244 265 IPR007122 GO:0051015
Cca03g01948 906 PRINTS Gelsolin family signature 595 614 IPR007122 GO:0051015
Cca03g01948 906 PRINTS Gelsolin family signature 514 533 IPR007122 GO:0051015
Cca03g01948 906 PRINTS Gelsolin family signature 332 348 IPR007122 GO:0051015
Cca03g01948 906 PRINTS Gelsolin family signature 391 411 IPR007122 GO:0051015
Cca03g01948 906 PRINTS Gelsolin family signature 454 474 IPR007122 GO:0051015
Cca03g01948 906 PRINTS Gelsolin family signature 358 376 IPR007122 GO:0051015
Cca03g01948 906 PRINTS Gelsolin family signature 566 588 IPR007122 GO:0051015
Cca03g01948 906 SUPERFAMILY Actin depolymerizing proteins 431 536 - -
Cca03g01948 906 MobiDBLite consensus disorder prediction 771 798 - -
Cca03g01948 906 CDD gelsolin_S4_like 307 408 - -
Cca03g01948 906 SUPERFAMILY VHP, Villin headpiece domain 840 906 IPR036886 GO:0003779|GO:0007010
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01948 Cca-Chr3 39386635 39399206 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01948 - - gmx:100803795 1400.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01948 03 39386635 39399206 Cca02g00395 02 8323198 8335390 PCT