Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00395 ATGTCTAGCTCGGCAAAAATTTTGGATCCTGCATTCCAGGGAGTGGGTCAAAGGATAGGAACTGAAATATGGAGGATTGAGAATTTTCAGCCAGTTCTGTTACCCAAATCTGAATATGGGAAATTCTACATGGGAGATTCGTACATCATCTTGCAGACAACTCAAGGCAAAGGAGGCTCTTATTTTTATGATTTACACTTCTGGCTTGGAAAGGATACAAGTCAGGATGAGGCTGGAACTGCAGCCATTAAAACTGTTGAACTTGATGCTGCTCTTGGAGGGCGTGCAGTGCAGCACAGGGAAATCCAAGGACATGAATCCGACAAGTTCTTGTCATACTTTAAACCTTGTATAATACCATTAGAGGGGGGTGTTGCATCTGGGTTTAAAACACTTGAAGAGGAGGAGTTTGAAACACGTTTGTATGTATGCAAAGGGAAAAGAGTTGTTAGATTGAAACAGGTCCCTTTTGCAAGGTCTTCATTGAACCATGATGATGTGTTCATACTAGACACTCAGGATAAGATTTATCAATTCAATGGCGCAAATTCAAATATTCAGGAAAGAGCCAAGGCTTTGGAAGTTATACAGTTTCTGAAAGAAAAATATCATGAAGGGAAATGTGATGTTGCAATTGTTGATGATGGCAAGTTAGACACCGAGTCAGACTCGGGTGAGTTTTGGGTCCTCTTTGGTGGTTTTGCTCCCATTGGGAAGAAGGTAATCAGCGAGGACGATATTATTCCAGAGAGAATTCCAGCTCAGCTTTATAGTATTGTTGATGGTGAGGTTAAGCCCGTAGAAGGTGAATTATCTAAATCACTGTTGGAAAACAACAAATGCTATATACTGGACTGCGGTGCTGAGATATTTGTCTGGGTTGGCCGGGTAACACAAGTTGAAGAACGAAAAGCAGCCTGCCAAGCTGTTGAGGAGTTTGTTGCAAGCCAAAATAGGCCAAAATCTACGAGGATAACCAGGATTATTCAAGGTTATGAGACACATTCATTTAAGTGCAATTTTGATTCTTGGCCATCAGGAAATGCTAGTACCGGTAATGAGGAAGGAAGGGGGAAAGTTGCTGGTACACATCATTTAGAAAGAGTAGGGGAAAAAACGCACTCCAGTGAGCACCACAGTGAGTTTCCATTGTTGTGTGAAGGAAAGGGTGCGTTGCATATTTATGAGTGCGTTACGTTGTTGCAGGTGAGGTTGatcattaaaaagggtcacccaccatttatccacgtaccaagcctaatagtactggacgtgaggggttgtattgggaaaaacccaagtctcacatcctGTTGGTTTGGCAAAGACAGCAACGAGGAGGACCAGGCAATAGCTACTCGGTTGACCAATACAATGTCTACCTCATTAAAGGGTAGACCTGTACAGGGTCGCATATTTGAAGGCAAAGAGCCACCACAGTTTGTTGCTCTTTTCCAACCAATGGTGGTCCTTAAGGGGGGATTGAGCTCTGGATACAAGAAACTAATAGAGGACAAAGGTGTATCGGATGAGACATACACAGCGGAATCTATTGCACTTATTCGAATTTCTGGAACTTCTATTCATAACAATAAATCAGTACAAGTTGATGCAGTGCCATCATCATTGAATTCTACCGAGTGTTTTGTCCTGCAATCTGGCTCTACAATTTTCACTTGGCATGGAAATCAGTGTTCCTTTGAGCAGCAACAGCTTGCAGCAAAGGTTGCTGAATTTTTAAGGCCAGGAGTTACTTTAAAGCATGCCAAAGAAGGTACAGAAAGCTCAGCTTTCTGGTTTGCAATAGGAGGAAAACAAAGTTACACCAGCAAGAAAGTTGTTAATGAGGTTGTCAGAGATCCACATTTATTCACTTTATCATTTAATAGAGGTAGCATTGCTTGTCATGTTGAAGAGGTTTACAACTTCTCTCAAGATGACCTATTGACGGAGGATATCCTCGTACTTGACACACATGCGGAAGTGTTTATTTGGATTGGTCAGTCTGTTGACCCAAAGGAAAAGCAAAATGCATTTGAAATTGGCCAGAAATACATTGATATGGCTGCATCTTTGGAGGGACTATCTCCACACGTACCGCTATATAAAGTAACAGAAGGGAACGAACCTTGCTTTTTCACAACATACTTTTCGTGGGATCATGCAAAAGCTATGGTTCTTGGGAACTCATTTCAGAAAAAGGTTGCACTGCTCTTTGGGATCGGCCATGCTGTGGAGGATAAGTCGAATGGATCAAGTCTAGGGGGACCAAGACAAAGAGCAGAAGCTTTGGCTGCTTTATCAAATGCATTTAGCTCGTCTTCTGAGAAAGCATCCAGTATGACACAAGATAGATTGAATGGGTTAAACCTAGGAGGACCAAGACAAAGGGCAGAAGCTTTAGCCGCATTAAACTCTGCATTTAGTTCATCATCTGGGACGAAGTCTTTTTCTCCTAGGGCATCTGGAAGAGGTCAAGGATCTCAAAGAGCAGCAGCAGTGGCTGCTCTTTCAACAGTTCTTACAGCTGAAAAAAAGAAAAAATCTCCTGATGGTTCTCCTGTGTCTATCGGTAGTCCTGTCACAGAAATTAGCGCTACTGAAATTAAAAGCGATTTCTCTGAAGTTGAAGAAGTTACAGAAGCCAAGGAAATAGAGGAACTTGCCCCTGCAACTGGTAGCAATGAGGATTTGGAACCGAAGCAAGAAAATGCAGAGGAGGGAAATGATAGTCAAATGACGTTCAGTTATGATCAATTAAAGACTAAATCTGGTCATAATGTGCCTGGAATAGATAACAAACGGAGAGAGGCTTATCTGTCGGACGAGGAGTTCAACACTATATTTGGAATGGATAAAGAATCATTTTACAAGTTGCCAAGATGGAAGCAGGACATGCTGAAAAAGAAATTCGAATTGTTCTAG 2925 0.4048 MSSSAKILDPAFQGVGQRIGTEIWRIENFQPVLLPKSEYGKFYMGDSYIILQTTQGKGGSYFYDLHFWLGKDTSQDEAGTAAIKTVELDAALGGRAVQHREIQGHESDKFLSYFKPCIIPLEGGVASGFKTLEEEEFETRLYVCKGKRVVRLKQVPFARSSLNHDDVFILDTQDKIYQFNGANSNIQERAKALEVIQFLKEKYHEGKCDVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKVISEDDIIPERIPAQLYSIVDGEVKPVEGELSKSLLENNKCYILDCGAEIFVWVGRVTQVEERKAACQAVEEFVASQNRPKSTRITRIIQGYETHSFKCNFDSWPSGNASTGNEEGRGKVAGTHHLERVGEKTHSSEHHSEFPLLCEGKGALHIYECVTLLQVRLIIKKGHPPFIHVPSLIVLDVRGCIGKNPSLTSCWFGKDSNEEDQAIATRLTNTMSTSLKGRPVQGRIFEGKEPPQFVALFQPMVVLKGGLSSGYKKLIEDKGVSDETYTAESIALIRISGTSIHNNKSVQVDAVPSSLNSTECFVLQSGSTIFTWHGNQCSFEQQQLAAKVAEFLRPGVTLKHAKEGTESSAFWFAIGGKQSYTSKKVVNEVVRDPHLFTLSFNRGSIACHVEEVYNFSQDDLLTEDILVLDTHAEVFIWIGQSVDPKEKQNAFEIGQKYIDMAASLEGLSPHVPLYKVTEGNEPCFFTTYFSWDHAKAMVLGNSFQKKVALLFGIGHAVEDKSNGSSLGGPRQRAEALAALSNAFSSSSEKASSMTQDRLNGLNLGGPRQRAEALAALNSAFSSSSGTKSFSPRASGRGQGSQRAAAVAALSTVLTAEKKKKSPDGSPVSIGSPVTEISATEIKSDFSEVEEVTEAKEIEELAPATGSNEDLEPKQENAEEGNDSQMTFSYDQLKTKSGHNVPGIDNKRREAYLSDEEFNTIFGMDKESFYKLPRWKQDMLKKKFELF 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00395 974 Gene3D Severin 615 733 IPR029006 -
Cca02g00395 974 PRINTS Gelsolin family signature 531 551 IPR007122 GO:0051015
Cca02g00395 974 PRINTS Gelsolin family signature 468 488 IPR007122 GO:0051015
Cca02g00395 974 PRINTS Gelsolin family signature 645 667 IPR007122 GO:0051015
Cca02g00395 974 PRINTS Gelsolin family signature 435 453 IPR007122 GO:0051015
Cca02g00395 974 PRINTS Gelsolin family signature 674 693 IPR007122 GO:0051015
Cca02g00395 974 PRINTS Gelsolin family signature 323 344 IPR007122 GO:0051015
Cca02g00395 974 PRINTS Gelsolin family signature 591 610 IPR007122 GO:0051015
Cca02g00395 974 SUPERFAMILY VHP, Villin headpiece domain 910 974 IPR036886 GO:0003779|GO:0007010
Cca02g00395 974 SUPERFAMILY Actin depolymerizing proteins 612 733 - -
Cca02g00395 974 CDD gelsolin_S6_like 620 720 - -
Cca02g00395 974 Pfam Gelsolin repeat 31 111 IPR007123 -
Cca02g00395 974 Pfam Gelsolin repeat 264 337 IPR007123 -
Cca02g00395 974 Pfam Gelsolin repeat 532 581 IPR007123 -
Cca02g00395 974 Pfam Gelsolin repeat 639 713 IPR007123 -
Cca02g00395 974 Pfam Gelsolin repeat 150 217 IPR007123 -
Cca02g00395 974 MobiDBLite consensus disorder prediction 907 923 - -
Cca02g00395 974 Gene3D Severin 133 246 IPR029006 -
Cca02g00395 974 SUPERFAMILY Actin depolymerizing proteins 381 526 - -
Cca02g00395 974 Gene3D Severin 402 516 IPR029006 -
Cca02g00395 974 Gene3D Severin 249 356 IPR029006 -
Cca02g00395 974 SUPERFAMILY Actin depolymerizing proteins 129 237 - -
Cca02g00395 974 Gene3D Severin 517 611 IPR029006 -
Cca02g00395 974 Gene3D Severin 6 132 IPR029006 -
Cca02g00395 974 PANTHER VILLIN 1 974 IPR007122 GO:0051015
Cca02g00395 974 SMART VILL_6 401 488 IPR007122 GO:0051015
Cca02g00395 974 SMART VILL_6 251 344 IPR007122 GO:0051015
Cca02g00395 974 SMART VILL_6 19 117 IPR007122 GO:0051015
Cca02g00395 974 SMART VILL_6 516 605 IPR007122 GO:0051015
Cca02g00395 974 SMART VILL_6 622 719 IPR007122 GO:0051015
Cca02g00395 974 SMART VILL_6 137 234 IPR007122 GO:0051015
Cca02g00395 974 SMART VHP_1 939 974 IPR003128 GO:0003779|GO:0007010
Cca02g00395 974 Gene3D Villin headpiece domain 898 974 IPR036886 GO:0003779|GO:0007010
Cca02g00395 974 ProSiteProfiles Headpiece (HP) domain profile. 909 974 IPR003128 GO:0003779|GO:0007010
Cca02g00395 974 CDD gelsolin_S3_like 254 343 - -
Cca02g00395 974 CDD gelsolin_S1_like 12 124 - -
Cca02g00395 974 MobiDBLite consensus disorder prediction 868 937 - -
Cca02g00395 974 MobiDBLite consensus disorder prediction 809 825 - -
Cca02g00395 974 CDD gelsolin_S5_like 517 607 - -
Cca02g00395 974 MobiDBLite consensus disorder prediction 809 830 - -
Cca02g00395 974 CDD gelsolin_S2_like 138 232 - -
Cca02g00395 974 SUPERFAMILY Actin depolymerizing proteins 508 610 - -
Cca02g00395 974 SUPERFAMILY Actin depolymerizing proteins 9 147 - -
Cca02g00395 974 SUPERFAMILY Actin depolymerizing proteins 223 345 - -
Cca02g00395 974 Pfam Villin headpiece domain 939 974 IPR003128 GO:0003779|GO:0007010
Cca02g00395 974 PANTHER VILLIN-3-LIKE ISOFORM X1 1 974 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00395 Cca-Chr2 8323198 8335390 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00395 - - gmx:100788765 1551.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00395 02 8323198 8335390 Cca02g00395 02 8323198 8335390 ECH
Cca03g01948 03 39386635 39399206 Cca02g00395 02 8323198 8335390 PCT