Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01875 ATGTGGGCTCTTCGTCGAGCTTCAATCTCTCTCAGGACCCGAGGGTTTAATGCGAGAGCATCTTGTGTCAAATTCGCTCAAACTAGTTGTGTGGAACAAGAGAGTTGCATCTCTGAGACTCATGGAATGGCGTGTGATCCGTTTTCGTCGCCGAAATCGCGTTACCATTCAGGACATAATGCTTCCCTGAATCTTACTATGGGGAGACGGGAGCTTTCTTCGAGTAGCACGAAAGAGGAGGATGATTTGGAGGACGGGTTTTCTGAGCTGGAGACCCCTGCCGTTGATGGAAATGAAAGTGACAGTTTAGTAACTTCTGATGCCGACTCAGCGGATGATGATGGTGACAAGGAGGACGTTGAGGAGGCACACAATGAGATTGATGAGCAGGCCAAGAAAGAAGAAAAACCACATCGTGGGAGGATTGAATCGGAATTATTCAAGGAGATCTTGAATGCTTCCGGTATGTCTATTCATATTGCTCTGGATAAGTGGTTGGAAGAAGGGAAGGAACTAACCAGAGAGGAGGTCTCACTGGCCATGGTTAATCTTCGGAGGCGGAAGATGTTTGGGAGAGCTTTGCAGCTCTCAGAGTGGCTCGAGTCAAAAAAGCAGTTTGAATTTATTGAAAGAGATTATGCTAGTCGACTCGATTTGATTGCCAAAGCCCGTGGCTTACAGAAGGCAGAGGCTTACATTGAGACTGTTCCTGAATCTTGTAAAAGTGAGATAATCTACCGGACTTTATTGGCTAACTGTGTCAGTCAGAACAATGTGAAGAAAGCAGAGGAAGTTTTCCATAAAATGAAGGATTTGGGTTTTCCTGTTACAGTATTTGCTTGCAATCAGTTGCTGCTTCTGTATAAGAGGAATTACAAGTCGAAAATAGCTGATGTGTTGTTGTTGATGGAAAATGAGAATATCAAACCTTCTTGTCTTACTTATGAAATCTTAATAGACTCAAAAGGCCAGTCCAAAGATATTGACGGAATGGATCAAATTGTTGATAGAATGAAGGCTCAAGGCATTGAACCAAGCATCAGTACCCAGGCTGTTTTGGTTAGGCATTACATCTTAGCTGGTCTTCAAGATAAAGCTGAAACTTTATTGAAGGAGATGGAAGGTGAAAACTTGAAACAGAATCGATGGCTATGCCAAATTTTGCTTCCCCTTTATGCAACCCTGGGAAAGGTGGATGAAGTGGGAAGAATTTGGAATGTCTGTGAGACAAAACCTCGTTATAATGAGTGTCTGGCTGCAATTGAAGCTTGGGGAAAGTTGAATAAAATTGATGAAGCGGAGGAAGTTTTTGAGATGATGGTGAAGAAATGGAAGCTTTCTTCCAAGATTTGCTCCATACTGCTGAAGGTTTATGCAAATCATAAGATGCTAATGAAGGGTAAGGATATTATTAAGCGAATGGGAGATAGTGGGTGCCCAATAGGCCCATTGACTTGGGATGCATTAGTGAAACTTTATGTCCAAGCTGGGGAAGTAGAGAAGGCAGACTCTGTTCTTCATAAGGCAGCCTATCAGAGCCAGTTGAAGCCAGTATTTTCTACCTACCTAACTATTTTGGAGCAGTATGCTAAGAGGGGTGACATCCATAATGCGGAAAAGATTTTCTTTAGAATGAAACAAGCTGATTATCCATTAAAACCAAAGATGTACCAAATTCTAATGAGTGCCTATATAAATGCAAAGCTTCCGGCCTATGGGATTCGGGACAGGTTTAAAGCGGATAACATAATACCCAATAGAATTTTGGCAAACATGTTGGCTCAAGTTGATGGATTTAGGAAGAATCCAGTTTCAGATTTGCTTGATTGA 1830 0.4219 MWALRRASISLRTRGFNARASCVKFAQTSCVEQESCISETHGMACDPFSSPKSRYHSGHNASLNLTMGRRELSSSSTKEEDDLEDGFSELETPAVDGNESDSLVTSDADSADDDGDKEDVEEAHNEIDEQAKKEEKPHRGRIESELFKEILNASGMSIHIALDKWLEEGKELTREEVSLAMVNLRRRKMFGRALQLSEWLESKKQFEFIERDYASRLDLIAKARGLQKAEAYIETVPESCKSEIIYRTLLANCVSQNNVKKAEEVFHKMKDLGFPVTVFACNQLLLLYKRNYKSKIADVLLLMENENIKPSCLTYEILIDSKGQSKDIDGMDQIVDRMKAQGIEPSISTQAVLVRHYILAGLQDKAETLLKEMEGENLKQNRWLCQILLPLYATLGKVDEVGRIWNVCETKPRYNECLAAIEAWGKLNKIDEAEEVFEMMVKKWKLSSKICSILLKVYANHKMLMKGKDIIKRMGDSGCPIGPLTWDALVKLYVQAGEVEKADSVLHKAAYQSQLKPVFSTYLTILEQYAKRGDIHNAEKIFFRMKQADYPLKPKMYQILMSAYINAKLPAYGIRDRFKADNIIPNRILANMLAQVDGFRKNPVSDLLD 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01875 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 276 IPR002885 -
Cca03g01875 609 MobiDBLite consensus disorder prediction 106 123 - -
Cca03g01875 609 MobiDBLite consensus disorder prediction 66 140 - -
Cca03g01875 609 Coils Coil 359 379 - -
Cca03g01875 609 MobiDBLite consensus disorder prediction 124 140 - -
Cca03g01875 609 TIGRFAM PPR: pentatricopeptide repeat domain 245 277 IPR002885 -
Cca03g01875 609 TIGRFAM PPR: pentatricopeptide repeat domain 314 346 IPR002885 -
Cca03g01875 609 Gene3D Tetratricopeptide repeat domain 416 603 IPR011990 GO:0005515
Cca03g01875 609 Gene3D Tetratricopeptide repeat domain 243 415 IPR011990 GO:0005515
Cca03g01875 609 Pfam PPR repeat 520 548 IPR002885 -
Cca03g01875 609 Pfam PPR repeat 421 443 IPR002885 -
Cca03g01875 609 Pfam PPR repeat 485 508 IPR002885 -
Cca03g01875 609 Pfam PPR repeat 451 479 IPR002885 -
Cca03g01875 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Cca03g01875 609 SUPERFAMILY TPR-like 367 548 IPR011990 GO:0005515
Cca03g01875 609 PANTHER OS01G0280400 PROTEIN 32 609 - -
Cca03g01875 609 Pfam Pentacotripeptide-repeat region of PRORP 245 404 IPR033443 -
Cca03g01875 609 PANTHER OS12G0527900 PROTEIN 32 609 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01875 Cca-Chr3 38116056 38120343 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01875 161 509 EF-hand Containing Proteins AT1G02150 26.446 2.46e-32 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01875 - - gmx:100500196 967.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01875 03 38116056 38120343 Cca02g01911 02 38483566 38484584 ECH
Cca03g01875 03 38116056 38120343 Cca03g01875 03 38116056 38120343 ECH