Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01911 ATGGCCAAGGGCGACAAGAAACTGGCGGAGAAAAAGCCCGCCGAGAAGGCTCCGCCGGAGAAGACCAAGGCCGAGAAAAAGATCCCTAGGGACGCGACTTCCGGCGagaagaagaagaagaagaaggcgaagaGCGTTGAGACTTACAAGATCTACATCTTTAAGGTTCTAAAGCAGGTGCACCCTGACATAGGGATCTCCAGCAAGGCCATGGGGATCATGAACAGCTTCATCAACGATATCTTTGAGAAACTCGCTCAAGAATCTTCAAGACTCGCTCGATACAACAAGAAACCTACAATAACCTCCCGCGAGATCCAAACCGCTGTTCGCCTTGTCCTCCCCGGCGAACTCGCCAAGCACGCCGTCTCTGAAGGCACCAAGGCCGTCACCAAATTCACCAGTTCTTGA 411 0.4964 MAKGDKKLAEKKPAEKAPPEKTKAEKKIPRDATSGEKKKKKKAKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01911 136 PANTHER HISTONE H2B 8 136 IPR000558 GO:0000786|GO:0003677|GO:0030527
Cca02g01911 136 SMART h2b3 39 135 IPR000558 GO:0000786|GO:0003677|GO:0030527
Cca02g01911 136 Gene3D Histone, subunit A 7 136 IPR009072 GO:0046982
Cca02g01911 136 PANTHER HISTONE H2B 8 136 - -
Cca02g01911 136 Pfam Core histone H2A/H2B/H3/H4 9 112 IPR007125 GO:0003677
Cca02g01911 136 PRINTS Histone H2B signature 49 67 IPR000558 GO:0000786|GO:0003677|GO:0030527
Cca02g01911 136 PRINTS Histone H2B signature 68 88 IPR000558 GO:0000786|GO:0003677|GO:0030527
Cca02g01911 136 PRINTS Histone H2B signature 90 107 IPR000558 GO:0000786|GO:0003677|GO:0030527
Cca02g01911 136 PRINTS Histone H2B signature 107 120 IPR000558 GO:0000786|GO:0003677|GO:0030527
Cca02g01911 136 PRINTS Histone H2B signature 120 133 IPR000558 GO:0000786|GO:0003677|GO:0030527
Cca02g01911 136 SUPERFAMILY Histone-fold 24 136 IPR009072 GO:0046982
Cca02g01911 136 ProSitePatterns Histone H2B signature. 104 126 IPR000558 GO:0000786|GO:0003677|GO:0030527
Cca02g01911 136 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01911 Cca-Chr2 38483566 38484584 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01911 K11252 - gmx:100305731 213.386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01875 03 38116056 38120343 Cca02g01911 02 38483566 38484584 ECH
Cca02g01911 02 38483566 38484584 Cca02g01911 02 38483566 38484584 ECH