Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01742 ATGGCCtcaggatcaggatcaggatcaggatcagAAGCAGAAGGTAGCACTGTGGTGGGGCTAACCCCAGAGGAATTCAGCGAACTGGAAAGCATCATAAAGACGCACCACAAGTTCGATCCTTCCCCAGAAATCTGCACGTCCATCATAACGCAGCGTATCGAGGCTCCGGCGCAGACGGTGTGGCCCCTGGTCCGAAGCTTCGAGAACCCCCAGAAGTACAAGCACTTCATAAAGAGCTGCAACATGCGGTCAGGCGACGGCGGCGTGGGCAGCATCAGAGAGGTCACCGTCGTGTCGGGGCTGCCGGCGTCCACGAGCACGGAGAGGCTGGAGATCCTTGACGACGAGAAGCAGCTGCTGAGCTTCCGCGTGGTGGGCGGCGAGCACAGGCTCCACAACTATCGCTCCGTCACCTCCGTCAACGAGTTCAACAGAGAGGGTAAGGTCTACACCATTGTGTTGGAGTCTTACGTTGTCGACATCCCCCCAGGGAACACCGGTGTCGATACTAAGATGTTTGTTGACACTGTCGTCAAGCTTAACCTTCAGAAACTCGCCCACGTTGCTATGGCTACCACTCCCATACTGCACTGA 597 0.5427 MASGSGSGSGSEAEGSTVVGLTPEEFSELESIIKTHHKFDPSPEICTSIITQRIEAPAQTVWPLVRSFENPQKYKHFIKSCNMRSGDGGVGSIREVTVVSGLPASTSTERLEILDDEKQLLSFRVVGGEHRLHNYRSVTSVNEFNREGKVYTIVLESYVVDIPPGNTGVDTKMFVDTVVKLNLQKLAHVAMATTPILH 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01742 198 MobiDBLite consensus disorder prediction 1 20 - -
Cca03g01742 198 MobiDBLite consensus disorder prediction 1 16 - -
Cca03g01742 198 CDD PYR_PYL_RCAR_like 46 190 - -
Cca03g01742 198 SUPERFAMILY Bet v1-like 46 192 - -
Cca03g01742 198 Gene3D - 10 195 IPR023393 -
Cca03g01742 198 PANTHER ABSCISIC ACID RECEPTOR PYL2-LIKE 23 194 - -
Cca03g01742 198 Pfam Polyketide cyclase / dehydrase and lipid transport 51 189 IPR019587 -
Cca03g01742 198 PANTHER - 23 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01742 Cca-Chr3 36540272 36541173 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01742 K14496 - gmx:100794619 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01742 03 36540272 36541173 Cca03g01742 03 36540272 36541173 ECH
Cca05g00845 05 23110807 23111421 Cca03g01742 03 36540272 36541173 PCT