Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01634 ATGAAGTTTATGAAGTTAGGTTCCAAGCCTGATGCTCTTCAAGCTGATGGAAACTCTATCAGGTATGTGTCATCTGAATTGGCTACAGATGTTACCATTAATCTTGGTGATGTTAAGTTTTATCTTCACAAGTTTCCTCTACTGTCAAAGAGCAACCGACTACAAAAATTGGTATCTAAAGCTAATGAAGAGAATTCTGATGATATTTACTTGGATAATTTCCCTGGCGGGCCAAAGGCCTTTGAAATATGTGCAAAATTCTGTTATGGAATGACTGTTACTCTTAATGCTTACAATGTTGTAGCTGCTCGTTGTGCAGCTGAATACCTTGAGATGACTGAGGATGTTGATAGAGGAAACTTGGTTTTAAAGATCGAGGTGTTTCTTAGCTCAAGTATATTACGTCGCTGGAAGGATTCTATAATTGTTCTCCAAACTTGTAGATCTCTTCTGCCATGGTCTGAGGATTTGAAGATAGTTGGAAGATGCATAGATTCCATAGCTTCTAAAACTTCTGTGGACCCAGCATACATCACTTGGTCTTACACTTATAATAGGAAGTTAACTGAAACTGATAAAATTATTGAGGACAAGATGACATTTCTAGAGAAAATTGAGTCTGTTCCTAAGGATTGGTGGGTTGAAGACATATGTGAGTTGGACATTGATCTTTACAAACGAGTAATGGTTGCTGTGAAATCAAAGGGAAGAATGGATGGTGTTGTGATTGGGGAGGCACTAAAAACCTATGCATTAAGATGGATACCTGATTCTGTTGATACATTGGTTTCTGATGCCAATGCCTCAAGGACCAAATCTGTGGTAGAAACAATTGTTTGTTTATTGCCATATGATAATGGCTTCGGTTGTTCATGTAGTTTCTTGCTGAAGCTATTGAGAGTGGCCATATTAGTTGAAGCAAATGAGTCATCTAGAGAAGAATTGATGAAGAGCATTGGCCTCAAATTGCATGAAGCCAGTGTCAAAGATTTATTGATTCCAGCAAGGTCTCCCCAAATTACCACATATGATGTTCTTTTGGTACAAGGTCTTTTGAGTCAATACATGAATCACGAAAAGGGAAGCCGCGGTATGGAGGTTGTTGAGGAGAAACATGGAGGGGAAGATAAATGTATTTTAGCATGTGGATCTTTATTGAATGTTGGCAAGTTGATGGATGGTTATCTTGGAGAAATTGCACATGATCCTAATCTTGGCCTCTCTAGTTTTGTTGATTTGTCACAATCCATTCCAGGTTTTGCTAGGCCAGATCATGATGGTCTATACAGAGCTATAGACATCTACTTGAAGGAGCACCCAGATTTGACAAAAGCTGAAAGGAAGAAGCTATGTGCATTGATGGATGTCCGGAAATTGACAGCAGACGCTTCTATGCATGCTGCGCAGAATGAACGCCTTCCTCTTAGAGTAGTAGTGCAGGTTCTCTTTTTTGATCAGGTCAGGTCTTCTATCAGCTTTCAAACACTCGGTACCAATAGTGGGCGTGATCCTACACAGTCTCCGATGAACGGAGATGGAAGATGTGAGAAAACGGCTGGAGATAGGTGCCAACCCCTCAAGAACCAGATGAGTCATTTGAGGATCAAGGAGGAGGAGTTACATGAAAATGGGAAGTTGAGTAAGAAGAATAGCAAAAGTGGCATTCAGTTGCTGCCATCGCGGTCTAGGAGAATCTTTGACAAGTTATGGAGTGGGGGAAAAGGGCTAGGAGAGAATAGGAGCTCAGAGACTTCAGGGAGTTCTAGTAGCCCAACTTCATTAGGCCATGGAGATACCAAATCATATAGCCTATCTTTGAGACACCAGAGGCATTCTGTCTCTTAG 1845 0.4076 MKFMKLGSKPDALQADGNSIRYVSSELATDVTINLGDVKFYLHKFPLLSKSNRLQKLVSKANEENSDDIYLDNFPGGPKAFEICAKFCYGMTVTLNAYNVVAARCAAEYLEMTEDVDRGNLVLKIEVFLSSSILRRWKDSIIVLQTCRSLLPWSEDLKIVGRCIDSIASKTSVDPAYITWSYTYNRKLTETDKIIEDKMTFLEKIESVPKDWWVEDICELDIDLYKRVMVAVKSKGRMDGVVIGEALKTYALRWIPDSVDTLVSDANASRTKSVVETIVCLLPYDNGFGCSCSFLLKLLRVAILVEANESSREELMKSIGLKLHEASVKDLLIPARSPQITTYDVLLVQGLLSQYMNHEKGSRGMEVVEEKHGGEDKCILACGSLLNVGKLMDGYLGEIAHDPNLGLSSFVDLSQSIPGFARPDHDGLYRAIDIYLKEHPDLTKAERKKLCALMDVRKLTADASMHAAQNERLPLRVVVQVLFFDQVRSSISFQTLGTNSGRDPTQSPMNGDGRCEKTAGDRCQPLKNQMSHLRIKEEELHENGKLSKKNSKSGIQLLPSRSRRIFDKLWSGGKGLGENRSSETSGSSSSPTSLGHGDTKSYSLSLRHQRHSVS 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01634 614 PANTHER OS12G0117600 PROTEIN 4 599 IPR043454 -
Cca03g01634 614 SMART BTB_4 29 127 IPR000210 GO:0005515
Cca03g01634 614 MobiDBLite consensus disorder prediction 577 614 - -
Cca03g01634 614 SUPERFAMILY POZ domain 22 116 IPR011333 -
Cca03g01634 614 MobiDBLite consensus disorder prediction 571 614 - -
Cca03g01634 614 MobiDBLite consensus disorder prediction 495 522 - -
Cca03g01634 614 Gene3D Potassium Channel Kv1.1; Chain A 4 125 IPR011333 -
Cca03g01634 614 CDD BTB_POZ_NPY3-like 21 124 - -
Cca03g01634 614 Pfam NPH3 family 211 464 IPR027356 -
Cca03g01634 614 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN NPY1 4 599 IPR029961 GO:0060918|GO:0099402
Cca03g01634 614 ProSiteProfiles NPH3 domain profile. 211 488 IPR027356 -
Cca03g01634 614 ProSiteProfiles BTB domain profile. 29 97 IPR000210 GO:0005515
Cca03g01634 614 Pfam BTB/POZ domain 25 115 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01634 Cca-Chr3 35378135 35382260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01634 8 487 EF-hand Containing Proteins AT3G44820 33.333 3.87e-90 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01634 - - gmx:100784205 1049.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01634 03 35378135 35382260 Cca03g01634 03 35378135 35382260 ECH
Cca05g00760 05 20964409 20975069 Cca03g01634 03 35378135 35382260 PCT