Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01631 ATGATGATGGTTCGATTCCTAGTGTTGCTTCTGATGTTGTTGGCAAGTTGTAGGGAAGTGGCGAAAGCAGAGTATACGTTAGATTCAGCGAGAGAGTCTTTGGTTAGACAAGAAGACACCATCATATTTGGTTTGATTGAGAGAGCCAGGTTCCCCTTCAATTCACCCACCTACAACTACAATCCAAATTACACCTCCGTTCTCCACTTCCTCGTTTCCAATACTGAGGCCATTCAAGCTAAGGCAGGAAGATACATTAATCCTGAAGAGAATGCTTTCTTCCCAGAAAATTTACCACCCTTGGTTGTTCTGCATTACCCCTTCTCACAGTTTTTGCATCCTGCAGCTGCTTTGATTAACATAAACAAGGACATTTGGAAACTCTACTTTCATGAGCTGATTCCAATGTTTGTTGCTTCTGGTGATGATGGAAACTATGCACAGACAGCTGCTACCGATCTTTCATTGCTGCAGGCCATCTCTAGAAGGATTCATTACGGAAAGTTTGTAGCTGAGGCCAAATTCAGAGAATCTCCTCAAGATTATGAACCTTTAATTCATGCTAAGGACAGAGAAGCATTGATGAAATTGTTGACATCTGAGAGCGTTGAAGAGATGATTGTAAAGAGGGTTAAAAAGAAGGCAAGGGTGTTTGGGCAGGAAGTGACACTTGATCTTGATGTGAAGGGAAAAAAATACAAGGTTGATCCAACAGTAGTTTCATTATTGTACCAGAAATGGTTAATACCCCTCACAAAAATTGTTCAAGTAGAGTACTTACTACGTCGCCTTGATTGA 798 0.411 MMMVRFLVLLLMLLASCREVAKAEYTLDSARESLVRQEDTIIFGLIERARFPFNSPTYNYNPNYTSVLHFLVSNTEAIQAKAGRYINPEENAFFPENLPPLVVLHYPFSQFLHPAAALININKDIWKLYFHELIPMFVASGDDGNYAQTAATDLSLLQAISRRIHYGKFVAEAKFRESPQDYEPLIHAKDREALMKLLTSESVEEMIVKRVKKKARVFGQEVTLDLDVKGKKYKVDPTVVSLLYQKWLIPLTKIVQVEYLLRRLD 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01631 265 ProSiteProfiles Chorismate mutase domain profile. 18 265 IPR008238 GO:0004106|GO:0009073
Cca03g01631 265 SUPERFAMILY Chorismate mutase II 24 265 IPR036263 GO:0046417
Cca03g01631 265 Gene3D Chorismate mutase, AroQ class superfamily, eukaryotic 18 265 IPR037039 GO:0004106|GO:0009073
Cca03g01631 265 TIGRFAM CM_pl-yst: chorismate mutase 26 265 IPR008238 GO:0004106|GO:0009073
Cca03g01631 265 PANTHER CHORISMATE MUTASE 2 265 IPR008238 GO:0004106|GO:0009073
Cca03g01631 265 PIRSF Chor_mut_AroQ_eu 15 265 IPR008238 GO:0004106|GO:0009073
Cca03g01631 265 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Cca03g01631 265 PANTHER CHORISMATE MUTASE 2 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01631 Cca-Chr3 35359843 35362105 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01631 K01850 - gmx:100791095 390.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01631 03 35359843 35362105 Cca03g01631 03 35359843 35362105 ECH
Cca05g00758 05 20945365 20948695 Cca03g01631 03 35359843 35362105 PCT