Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01297 ATGTTGGCAACTTATGGAGATGGAGAGCCAACTGACAATGCAGCAAGGTTCTACAAATGGTTTACTGAGGGGAAAGAAGAGAGGGGCACCTGGCTTCAACATCTCACATATGGAGTTTTTGGCCTAGGTAACAGACAATACGAACATTTTAATAAGATAGGTAAAGTTGTTGATGAAGATCTTAGTGAACAAGGTGCAAAGCGTCTTGTTACAGTTGGATTAGGTGATGATGATCAATCCATCGAGGATGATTTTTCTGCCTGGAAAGAAACTTTGTGGCCTGAGTTGGATCAGTTGCTCCGAGATGAGGATGATGCAAATACCGTCTCTACCCCCTATACAGCTGCTATTCTTGAATATCGAGTAGTGATTCATGACCCCTCAGTCACATCATCCTATGATAATCACACGAATGTGGCAAATGGGAATGCTGTGTTTGATATTCATCATCCTTGCAGGGTGAATGTTGCTGTACAAAAGGAGCTTCACAAACCTGAGTCTGACCGTTCTTGCATACATTTGGAATTTGATATATCTGGGACTGGCATAACATATGAAACTGGAGATCATGTGGGTGTTTATGCTGAGAACTGTGAAGAAACTGTTGAAGAAGCTGGGAGGTTGTTAGGTCAGAATTTAGATCTGTTGTTTACTCTTCACACTGATAAGGAGGATGGTTCTTCCCTTGGCGGTTCTCTCCTACCTCCTTTCCCTGGTCCTTGCACACTGCGTACTGCATTAGCACATTATGCCGATCTCTTGAACCCCCCACGAAAGGCTGCTTTAGTTGCATTAGCTGCGCATGCAACTGAACCTAGTGAAGCAGAAAGATTAAAGTTCCTTTCATCTCCTCAAGGGAAGGATGAGTACTCCAAATGGGTGGTTGGAAGCCAGAGAAGTCTCCTTGAGGTGATGGCAGAGTTTCCATCAGCAAAACCTCCCCTTGGTGTGTTTTTTGCTGCAGTAGCCCCTCGTTTACAGCCTCGTTATTATTCTATTTCATCCTCTCCTAGGTTTGCTCCTCAAAGGGTACATGTAACTTGTGCCTTGGTGTATGGTCCAACTCCCACTGGTAGAATTCACAAAGGAGTATGTTCAACCTGGATGAAGAATGCTATTCCGTTGGAGAAAAGTCGAGACTGCAGCTGGGCTCCAATTTTTATTAGACCATCGAATTTCAAGCTACCAGTTGATCATTCAATTCCTATTATTATGGTTGGACCTGGTACTGGTCTTGCACCTTTCAGGGGATTTTTACAGGAAAGATTTGCCCTCAAAGAGGATGGTGTTCAACTTGGCCCTGCAATACTCTTCTTTGGATGTAGGAATCGTCGAATGGATTATATTTATGAGGATGAGCTAAACAATTTTGTGGAACAAGGCTCTCTGTCAGAATTGATAGTTGCATTCTCTAGAGAGGGGGCTGAAAAGGAATATGTTCAACACAAGATTATGGATAAAGCTGCCCAACTGTGGAGTTTGATTTCTCAAGGAGGTTATCTTTACGTCTGTGGTGATGCCAAGGGTATGGCCAGAGATGTTCATCGAACTCTTCACACCATTGTCCAGCAGCAGGAAAATGTGGACTCGACAAAAGCCGAGGCTATAGTGAAAAAACTTCAAATGGATGGACGTTACCTTAGGGACGTATGGTGA 1656 0.436 MLATYGDGEPTDNAARFYKWFTEGKEERGTWLQHLTYGVFGLGNRQYEHFNKIGKVVDEDLSEQGAKRLVTVGLGDDDQSIEDDFSAWKETLWPELDQLLRDEDDANTVSTPYTAAILEYRVVIHDPSVTSSYDNHTNVANGNAVFDIHHPCRVNVAVQKELHKPESDRSCIHLEFDISGTGITYETGDHVGVYAENCEETVEEAGRLLGQNLDLLFTLHTDKEDGSSLGGSLLPPFPGPCTLRTALAHYADLLNPPRKAALVALAAHATEPSEAERLKFLSSPQGKDEYSKWVVGSQRSLLEVMAEFPSAKPPLGVFFAAVAPRLQPRYYSISSSPRFAPQRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEKSRDCSWAPIFIRPSNFKLPVDHSIPIIMVGPGTGLAPFRGFLQERFALKEDGVQLGPAILFFGCRNRRMDYIYEDELNNFVEQGSLSELIVAFSREGAEKEYVQHKIMDKAAQLWSLISQGGYLYVCGDAKGMARDVHRTLHTIVQQQENVDSTKAEAIVKKLQMDGRYLRDVW 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01297 551 Gene3D - 195 327 IPR023173 GO:0016491
Cca03g01297 551 Gene3D - 1 112 IPR029039 -
Cca03g01297 551 CDD CYPOR 147 551 - -
Cca03g01297 551 Pfam FAD binding domain 146 368 IPR003097 GO:0016491
Cca03g01297 551 Gene3D Translation factors 151 394 - -
Cca03g01297 551 SUPERFAMILY Riboflavin synthase domain-like 124 393 IPR017938 -
Cca03g01297 551 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 363 372 IPR001709 GO:0016491
Cca03g01297 551 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 477 493 IPR001709 GO:0016491
Cca03g01297 551 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 433 442 IPR001709 GO:0016491
Cca03g01297 551 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 404 423 IPR001709 GO:0016491
Cca03g01297 551 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 500 508 IPR001709 GO:0016491
Cca03g01297 551 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 185 195 IPR001709 GO:0016491
Cca03g01297 551 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 446 457 IPR001709 GO:0016491
Cca03g01297 551 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 329 336 IPR001709 GO:0016491
Cca03g01297 551 PANTHER NITRIC OXIDE SYNTHASE-RELATED 2 551 - -
Cca03g01297 551 PRINTS Flavodoxin signature 58 77 IPR001094 GO:0010181
Cca03g01297 551 PRINTS Flavodoxin signature 34 44 IPR001094 GO:0010181
Cca03g01297 551 Pfam Oxidoreductase NAD-binding domain 405 515 IPR001433 GO:0016491
Cca03g01297 551 PANTHER NADPH--CYTOCHROME P450 REDUCTASE 2 551 - -
Cca03g01297 551 Gene3D - 395 551 IPR039261 -
Cca03g01297 551 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 392 551 IPR039261 -
Cca03g01297 551 SUPERFAMILY Flavoproteins 2 101 IPR029039 -
Cca03g01297 551 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 149 396 IPR017927 GO:0016491
Cca03g01297 551 ProSiteProfiles Flavodoxin-like domain profile. 1 93 IPR008254 GO:0010181
Cca03g01297 551 Pfam Flavodoxin 2 88 IPR008254 GO:0010181
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01297 Cca-Chr3 30654275 30661774 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01297 K00327 - gmx:100781568 1069.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01136 05 28623469 28625522 Cca03g01297 03 30654275 30661774 PCT