Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00434 ATGGCCCCCAGCTTAAGCAAAACCTCGGAACAACACGCACTTTCTGTGGTCCATGCCGATTCACCCTTCTCCATAACCTTAGAAGGATCGAACTTTGTGGCTAACGCTCACCCTTTTCTCACCCAAGTTCCGGCCAACATAGTAGCCAGCCCTGCGCCCTCTCTCGGTTCCAAGCCCAACACCACCCCCGTGGGCTGCTTGGTGGGCTTCGACGCCGACCGCCCCAGAAGCCGACACGTGGCAGCGGTGGGCAAACTGAGGGGCATCAAGTTCATGAGCCTATTCCGCTTCAAGGTGTGGTGGACCACCCACTGGGCCGGAAGCAACGGGCACGAGATGGAGCACGAAACCCAAATGCTCTTGCTTGACAAAAACCATGCACTGGGGCGCCCCTACGTGTTGCTTCTCCCCATCCTTGAAGGCTCCTTCCGAGCCTCGCTCCAACCCGGCTTCGATGACTACGTGGACGTCTGCGTGGAGAGCGGGTCCACACGTGTCACCAGCTCCAGCTTCAGGAGCTGCTTGTACATCCACGTGGGCGACGACCCCTACAGGCTTGTCAAAGAAGCAACCAAAGTGGTTAGAATGCATCTGGGGACTTTCAAGCTTCTGGAAGAAAAAACCCCACCAGTGATTGTGGACAAGTTCGGTTGGTGCACGTGGGACGCATTTTACTTGAAGGTGCATCCGGAGGGAGTATGGGAAGGGGTGAAGGGGTTGGTGGAGGGAGGGTGTCCGCCGGGGATGGTCCTCATCGACGACGGGTGGCAATCGGTTAGTCACGACGAGGAGGAAGAAGAGGCTGTGGACCGAACCTCAGCTGGGGACCAAATGCCTTGCAGGCTCGTGAGGTTGGAGGAGAATGACAAGTTCAGGAATTACAGGAGTGGAGGGAGGAATGGGTATGGGATGGGGGCGTTTGTTAGGGATTTGAAGGAGCGGTTTGGGAGCGTGGAGCAGGTGTACGTTTGGCACGCGCTCTGTGGGTACTGGGGTGGTGTCAGGCCTCAGGCTCCGGGCATGCCCGAAGCTAAGGTGATAACTCCGAAGCTGTCCAAAGGGTTGGGAATGACAATGGAGGATTTGGCGGTGGATAAGATTGTGAATAACGGCGTGGGACTAGTGCCACCTCACCTCGCTCACCGCTTGTTCCAGGGGATTCACTCGCGTTTGGAATCCGCCGGAATTGACGGCGTCAAGCTTGACGTTATACACTTGCTTGAGATGCTAGCGGAGGAATACGGTGGGCGTGTTGAGTTAGCCAAAGCTTATTACAAAGCACTTACTGCTTCGGTGAAGAAGCATTTCAAAGGCAACGGAGTCATTGCCAGCATGGAGCATTGTAATGACTTCTTTCTCCTTGGCACCGAAGCCATATCCCTTGGGCGCGTAGGAGATGATTTTTGGTGCACTGATCCGTCTGGGGATCCAAATGGTACGTATTGGCTCCAAGGATGTCACATGGTGCACTGTGCCTACAACAGCTTGTGGATGGGAAATTTCATTCAGCCGGATTGGGACATGTTCCAGTCCACTCACCCTTGTGCCGAATTCCATGCTGCCTCTAGGGCCATATCTGGTGGACCCATTTACGTTAGCGACTGTGTTGGAAAGCACAACTTCAAGTTGCTCAAGACCCTCGCTTTGCCTGATGGCTCCATCTTGCGTTGTCAACATTATGCACTTCCCACACGAGACTCTTTATTTGAAGATCCATTACATGATGGCAAAACAATGCTCAAAATTTGGAATCTCAACAAATATACAGGTGTTTTGGGAGTATTTAATTGCCAAGGAGGTGGGTGGTGCCCTGTGACTCGGCGAAACAAGAGTGCCTCTGAATTTTCACGCACTGTGACATGCTTAGCGAGTCCTGGGGATATTGAATGGAGCAACGGGAAAAGTCCAATAGACATAAAAGAAGTGGAAGTGTTTGCTCTATATTTGCTCAAGGACAACAAACTAAAGCTCATGAAGTCTTCGGAGAACTTGGAGGTTTCACTGGAGCCATTTAGTTTTGAGCTTTTGACAGTGTCTCCAGTGACAGTGTTACCAAAAAGGTTAATTCAGTTTGCTCCAATTGGACTAGTGAACATGCTTAACTCGGGTGGTGCCATTCAGTCCCTGGAGTTTGATGACCACACGGATTTGGTCAAAATTGGGGTGAGGGGTTGTGGGGAGATGAGGGTGTTTGCTTCAGAGAAGCCACTTAGTTGCACAATTGATGGGGTGGCTGTGAAATTTGATTACGAGGATAAGATGGTGAGGGTGCAAGTTCCATGGCCTAGTTCTTCAAAATTGTCAATGCTTGAGTTTTTGTTTTAA 2325 0.5174 MAPSLSKTSEQHALSVVHADSPFSITLEGSNFVANAHPFLTQVPANIVASPAPSLGSKPNTTPVGCLVGFDADRPRSRHVAAVGKLRGIKFMSLFRFKVWWTTHWAGSNGHEMEHETQMLLLDKNHALGRPYVLLLPILEGSFRASLQPGFDDYVDVCVESGSTRVTSSSFRSCLYIHVGDDPYRLVKEATKVVRMHLGTFKLLEEKTPPVIVDKFGWCTWDAFYLKVHPEGVWEGVKGLVEGGCPPGMVLIDDGWQSVSHDEEEEEAVDRTSAGDQMPCRLVRLEENDKFRNYRSGGRNGYGMGAFVRDLKERFGSVEQVYVWHALCGYWGGVRPQAPGMPEAKVITPKLSKGLGMTMEDLAVDKIVNNGVGLVPPHLAHRLFQGIHSRLESAGIDGVKLDVIHLLEMLAEEYGGRVELAKAYYKALTASVKKHFKGNGVIASMEHCNDFFLLGTEAISLGRVGDDFWCTDPSGDPNGTYWLQGCHMVHCAYNSLWMGNFIQPDWDMFQSTHPCAEFHAASRAISGGPIYVSDCVGKHNFKLLKTLALPDGSILRCQHYALPTRDSLFEDPLHDGKTMLKIWNLNKYTGVLGVFNCQGGGWCPVTRRNKSASEFSRTVTCLASPGDIEWSNGKSPIDIKEVEVFALYLLKDNKLKLMKSSENLEVSLEPFSFELLTVSPVTVLPKRLIQFAPIGLVNMLNSGGAIQSLEFDDHTDLVKIGVRGCGEMRVFASEKPLSCTIDGVAVKFDYEDKMVRVQVPWPSSSKLSMLEFLF 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00434 774 Pfam Raffinose synthase or seed imbibition protein Sip1 28 757 IPR008811 -
Cca03g00434 774 SUPERFAMILY (Trans)glycosidases 210 547 IPR017853 -
Cca03g00434 774 Gene3D Aldolase class I 207 549 IPR013785 -
Cca03g00434 774 PANTHER GALACTINOL--SUCROSE GALACTOSYLTRANSFERASE 5-RELATED 1 774 - -
Cca03g00434 774 PANTHER - 1 774 IPR008811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00434 Cca-Chr3 6828058 6833770 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00434 27 774 Glycoside Hydrolase AT5G40390 65.223 0.0 1055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00434 K06617 - gmx:100800308 1365.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00434 03 6828058 6833770 Cca11g01812 11 43060606 43064876 ECH
Cca03g00434 03 6828058 6833770 Cca03g00434 03 6828058 6833770 ECH