Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00406 ATGGTTTCTTCTAATGGACTAGCAACTACGCAACCTATTTTTTCTTTTGGATTGATTTCTGATGTCCAATATGCTGACATTCCTGATGGTAGCTCGTTCCTTGGTGTTCCACGGTATTATAGGCATAGTATTCTTGTGTTGCGGAGAGCAATTAAAGAATGGAACACTCATCAGAAGCACAACTTTGTGGTTAATTTTGGAGATATTGTTGATGGATTTTGTCCCAAAGATCAATCTCTTAGTACTGTAAAGAAAGTTCTGGACGAATTTGAGATGTTCAGGGGACCTGTGTATCATATGATTGGCAATCACTGCCTATACAATCTTCCTCGCCGCAAGTTACTTCCATTGTTGGAGATACAAACTCTTGATGGTCGTGCATACTATGATTTCTCACCAGTGCCTGAATATAGATTTATAGTTCTGGATGGCTATGACATCAGTGCCATTGGTTGGCCCCAAGATCATCCAAAAACATTGGAGGCCTTGAAAATTCTAAGGGAGAAGAACCCAAATGAAAATAAGAACAGTCCAACAAATTTGGAGGGGCTTGAAAGAAGGTTTCTCATGTTTAATGGAGCCATTGGAAAGCAACAGATGGAATGGTTAGATGGTGTTCTCATGGAGGCAACAAATTTGGAACAGAAGGTGATTGTGTGTTGCCATCTACCTCTAGATCCTGGTGCGGGAAGTGAGAAGGGACTGTTGTGGAATTATGATGAAGTAATGAATTTGATACACAGATACAATTGTGTTAAGGTATGTCTCGCTGGACATTATCATAAAGGAGGATACTCCATTGATTCTCATGGGATACACCATAGAGTTCTTGAAGCTGCTTTGGAATGTCCTCCAGGTACGGATGCATTTGGAAACATTGATGTATATGATGATCGGATATCTCTTGTGGGAACTGACAGAATGAAAAGTACAGACATGCATTTTAATCCCCCAAGTTAA 960 0.401 MVSSNGLATTQPIFSFGLISDVQYADIPDGSSFLGVPRYYRHSILVLRRAIKEWNTHQKHNFVVNFGDIVDGFCPKDQSLSTVKKVLDEFEMFRGPVYHMIGNHCLYNLPRRKLLPLLEIQTLDGRAYYDFSPVPEYRFIVLDGYDISAIGWPQDHPKTLEALKILREKNPNENKNSPTNLEGLERRFLMFNGAIGKQQMEWLDGVLMEATNLEQKVIVCCHLPLDPGAGSEKGLLWNYDEVMNLIHRYNCVKVCLAGHYHKGGYSIDSHGIHHRVLEAALECPPGTDAFGNIDVYDDRISLVGTDRMKSTDMHFNPPS 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00406 319 Pfam Calcineurin-like phosphoesterase 15 262 IPR004843 GO:0016787
Cca03g00406 319 SUPERFAMILY Metallo-dependent phosphatases 14 313 IPR029052 -
Cca03g00406 319 PANTHER MANGANESE-DEPENDENT ADP-RIBOSE/CDP-ALCOHOL DIPHOSPHATASE 1 319 - -
Cca03g00406 319 CDD MPP_Nbla03831 14 302 IPR041869 -
Cca03g00406 319 Gene3D - 9 308 IPR029052 -
Cca03g00406 319 PANTHER - 1 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00406 Cca-Chr3 6323639 6326348 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00406 K01517 - gmx:100815255 615.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00406 03 6323639 6326348 Cca03g00406 03 6323639 6326348 ECH
Cca03g00406 03 6323639 6326348 Cca11g01785 11 42713009 42715648 PCT