Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00296 ATGCAATTCTCGCAACCAATGTTTCCACTGCACcctccgccgccgccgagctccggcggcgccgctgccgGGGATGCCGTTGCTCCTCCTCTGGTCAGAACTTACCGTGCTTGGAAAGGCAACAACGAATTTTGTCTTGGAGGGAGAGTTATATTTGGACCTGATGTGAAATCTATATTTTTGACGATGTTTCTTATCGTTGCCCCTGTTGCTGTTTTCTCTGCTTTTGTGGCGAGGAAACTGTTGGATGATTTTCCTCATCACTGGGGATATTCAATATTGATCATACTTATTGTTCTCACAATGTTCGTTCTGATCACCCTTGTGCTGACCTCAGGAAGAGATCCTGGCATAGTGCCCCGTAATGCTCAGCCCCCACTGATGATGGATGAATCTGATGGGAGTGCCAACATCAACAATGAACAAACTCCACGGCTACATTTTCCGCGATCAAAGGAAGTCATCGTCAATGGAGTTTCTGTGAAGATTAAATATTGTGATACTTGCATGCTCTATAGACCTCCCCGCTGTTCTCATTGTTCAGTGTGTGATAACTGTGTAGAGAGATTTGATCATCACTGCCCCTGGGTGGGGCAGTGCATTGGATTGCGAAATTACCGGTTCTACTACATGTTTGTTTTCTCTGCAACCCTTCTCTGTTTGTACATTCATGGCTTTTGCTGGGTCTACATTAAGAAGATCATGGACTCAGAGGAGATATCAATTTGGAAAGCAATGATCAAAACTCCTGCTTCCATTGCACTAATATTATACTCCTTCATTTCTGTCTGGTTTGTTGGTGGCCTCACTGTTTTCCACACATATCTAATCAGCAAAAACCAGTCAACTTATGAAAATTTTAGATACCGGTATGACCAACAAGCCAACCCTTTTGACAAAGGAGTAGCTGAGAACTTCAAAGAAATATTCTGCTCTGTCATTCCTCCATCCAAGAACAAATTCAGGTCTAAGATTCCAATTCCGAAGGAACCATCAGAAGCATCTGGAAGAAGGGCTATTGAATCCCTAAGCCCTGTGGTGAGAAAAACAGCAGGAGACCTGGAACTAGGGGCCCCAGTGTACAATGATGCCGAGGAAGAGTTTGAAAGTGATTATGCAGATGAGTTTGCCAATGATGATGAACATGGCAAGGGTAGTGAAATAGGTGATATGCCAGTGGATTTGAGCAGGATGCTTTACACAGAAGGGGGGCAGAGACAGGTTGCTTCATCTCTAAGGCACTCTTTGTGGGAAAGAGACACCAAAGATAGTGGAGagaaaacacactttggtacttga 1299 0.4165 MQFSQPMFPLHPPPPPSSGGAAAGDAVAPPLVRTYRAWKGNNEFCLGGRVIFGPDVKSIFLTMFLIVAPVAVFSAFVARKLLDDFPHHWGYSILIILIVLTMFVLITLVLTSGRDPGIVPRNAQPPLMMDESDGSANINNEQTPRLHFPRSKEVIVNGVSVKIKYCDTCMLYRPPRCSHCSVCDNCVERFDHHCPWVGQCIGLRNYRFYYMFVFSATLLCLYIHGFCWVYIKKIMDSEEISIWKAMIKTPASIALILYSFISVWFVGGLTVFHTYLISKNQSTYENFRYRYDQQANPFDKGVAENFKEIFCSVIPPSKNKFRSKIPIPKEPSEASGRRAIESLSPVVRKTAGDLELGAPVYNDAEEEFESDYADEFANDDEHGKGSEIGDMPVDLSRMLYTEGGQRQVASSLRHSLWERDTKDSGEKTHFGT 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00296 432 MobiDBLite consensus disorder prediction 411 432 - -
Cca03g00296 432 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 25 422 - -
Cca03g00296 432 ProSiteProfiles DHHC domain profile. 164 214 - -
Cca03g00296 432 MobiDBLite consensus disorder prediction 413 432 - -
Cca03g00296 432 PANTHER S-ACYLTRANSFERASE 25 422 - -
Cca03g00296 432 Pfam DHHC palmitoyltransferase 163 288 IPR001594 GO:0016409
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00296 Cca-Chr3 4454833 4459603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00296 97 312 Lipid Metabolism Gene Families AT4G22750 27.391 3.83e-20 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00296 - - gmx:100791866 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00296 03 4454833 4459603 Cca09g02377 09 49114422 49119310 ECH
Cca03g00296 03 4454833 4459603 Cca03g00296 03 4454833 4459603 ECH