Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00268 ATGGCCATGCCACCCACAATCACCCTTAGCACTGCAAGGTCCCCACCTTCATTAGCCTCAATTGCCAACAATGCTGGCTTGCGACCACAGTTCAACCCTTATGCTTTAAAGTCATCTTTCTTCTCTGGTTCCTTTAATCTCTTACTTCATCCAAAACAGCGCCTTCTTACTTCTGGAGCTCCCAGGATTTCCATGCGTGTGGCTTCCAAGCAAGCCTATATCTGTCGTGATTGCGGGTATATTTATAATGAGAGGACCCCCTTTGAGAAATTGCCTGATAAGTTCTTCTGTCCTGTTTGTGGAGCTCCAAAACGAAGGTTTAGGCCCTACGCTACAGATGTTTCAAGAAACGCAAATGATACAGATGTTAGAAAGGCGCGAAAAGCCGGAATCAAAAGAGAAGAAGCAATTGGGGAAGCACTTCCAATTGCAGCTGCCGTGGGAATTGTAGTGCTCGCGGGATTATACTTATATCTGAACAACAAATTTTAG 492 0.4512 MAMPPTITLSTARSPPSLASIANNAGLRPQFNPYALKSSFFSGSFNLLLHPKQRLLTSGAPRISMRVASKQAYICRDCGYIYNERTPFEKLPDKFFCPVCGAPKRRFRPYATDVSRNANDTDVRKARKAGIKREEAIGEALPIAAAVGIVVLAGLYLYLNNKF 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00268 163 CDD rubredoxin 73 110 IPR024935 GO:0005506
Cca03g00268 163 Gene3D - 70 110 - -
Cca03g00268 163 Pfam Rubredoxin 73 107 IPR024935 GO:0005506
Cca03g00268 163 SUPERFAMILY Rubredoxin-like 70 117 - -
Cca03g00268 163 ProSiteProfiles Rubredoxin-like domain profile. 70 110 IPR024934 GO:0005506
Cca03g00268 163 PANTHER RUBREDOXIN-LIKE SUPERFAMILY PROTEIN 11 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00268 Cca-Chr3 3931537 3932808 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00268 - - gmx:100500575 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00268 03 3931537 3932808 Cca03g00268 03 3931537 3932808 ECH
Cca09g02283 09 48062759 48063736 Cca03g00268 03 3931537 3932808 PCT
Cca09g02346 09 48751562 48752936 Cca03g00268 03 3931537 3932808 PCT