Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00232 ATGGTTACCATGATTGTTGGAGAGATAGCGAATTTTGTGGCGTACGTTTACGCCCCCGCGGTGCTTGTCACGCCGCTTGGTGCTTTGAGTATTATTGTTAGTGCTGTCTTGGCGCATTTCATGTTGAACGAGAAGCTGCAGAAAATGGGCATGCTCGGGTGTCTTTTGTGCATTGTGGGATCCACTGTGATTGTGCTCCATGCACCTCAAGAAAAGAGTCTTAGTTCTGTACAGGAAATATGGCAGATGGCTGTTCAACCGGCATTCCTGTTGTACACGGCCTCAGCTATCGCTGTAGCGGTCTTTTTGATTGTGTATTGTGCTCCTCGCTATGGCCAGACTAATATTTTAGTTTATATTGGAATATGCTCCATAATTGGATCCTTGACTGTCATGAGCATAAAGGCGATTGGCATTGCTATAAGACTTACACTTGAGGGTGCAGACCAGTTTGTTCAGTTTCAGACATGGATTTTTACAATGGTCGCTATTTCATGCATCGTGACTCAGTTAAATTATCTTAATATGGTCTGTATCACTGTTAACTTTTATCTGAACTTAATAATGTTTGGTATTTGGTAA 582 0.4244 MVTMIVGEIANFVAYVYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCIVGSTVIVLHAPQEKSLSSVQEIWQMAVQPAFLLYTASAIAVAVFLIVYCAPRYGQTNILVYIGICSIIGSLTVMSIKAIGIAIRLTLEGADQFVQFQTWIFTMVAISCIVTQLNYLNMVCITVNFYLNLIMFGIW 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00232 193 Pfam Magnesium transporter NIPA 1 177 IPR008521 GO:0015095|GO:0015693|GO:0016021
Cca03g00232 193 PANTHER MAGNESIUM TRANSPORTER-RELATED 1 182 - -
Cca03g00232 193 PANTHER UNCHARACTERIZED 1 182 IPR008521 GO:0015095|GO:0015693|GO:0016021
Cca03g00232 193 SUPERFAMILY Multidrug resistance efflux transporter EmrE 3 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00232 Cca-Chr3 3405448 3411105 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00232 K22733 - gmx:100783541 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00232 03 3405448 3411105 Cca03g00232 03 3405448 3411105 ECH
Cca09g02311 09 48371647 48394201 Cca03g00232 03 3405448 3411105 PCT