Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00104 ATGGGAGAGCCAAGATCTGcatcaccaccaccaccgccaccaccgccacTCCCCATCTCCCTCGTCCAACCCTCCCGCAGGAAGCGCCAGAAGCCTAAAATGGTTCGCATGTTCCGCTCCGTCTTCCGCTCCCTCCCCATCATAACCCCCTCCTGCAGGTTCCccgccatccccgccaccgaaggccaccaacaccaccaccaccaGAAGAGCCTCAACAGCGTCAACAGCGGCGCCAAGGTCTCCGGCACCCTGTTCGGGCGGCGCAAGGGCCGCGTGAGCCTCTCGGTGCAGGAGAACCCCAAGTGCCTCCCCTCCATGGTGGTGGAGCTCTCCATGCAGACGAGCGCGCTGCAGAAGGAGATAGCGAACGGCATGGTGAGGATTGCGCTTGAGTGCGAGAAGCGAGCGGATAAGGACAAGACGAAGATCGCGGACGAACCCCTCTGGACCATGTATTGCAATGGCAAGAAGTGCGGGTACGGCGTTAGAAGAGAGGCCACCGAGGAGGATTTGTATCTGATGGAGCTTCTTAAAGCTGTCTCCATGGGCGCCGGCATGCTTCCTTTGAGAGCTGACGTCGTCGACGACGCCGGAGAGGTTGCCTACATGCGAGCCCCTTACGAGCACGTTGTTGGCTCCAGGGATTCTGAGACTCTCTACATGTTGAGTCCAGACCAGGGGGAAATCGGAAGATATACGATCATGCAAGGTATCAAGCAACTCATTCTCACGTGA 738 0.5244 MGEPRSASPPPPPPPPLPISLVQPSRRKRQKPKMVRMFRSVFRSLPIITPSCRFPAIPATEGHQHHHHQKSLNSVNSGAKVSGTLFGRRKGRVSLSVQENPKCLPSMVVELSMQTSALQKEIANGMVRIALECEKRADKDKTKIADEPLWTMYCNGKKCGYGVRREATEEDLYLMELLKAVSMGAGMLPLRADVVDDAGEVAYMRAPYEHVVGSRDSETLYMLSPDQGEIGRYTIMQGIKQLILT 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00104 245 Pfam Protein of unknown function, DUF617 81 228 IPR006460 GO:0010274
Cca03g00104 245 MobiDBLite consensus disorder prediction 1 33 - -
Cca03g00104 245 PANTHER PROTEIN MIZU-KUSSEI 1 6 232 IPR006460 GO:0010274
Cca03g00104 245 TIGRFAM A_thal_3588: uncharacterized plant-specific domain TIGR01570 81 228 IPR006460 GO:0010274
Cca03g00104 245 MobiDBLite consensus disorder prediction 1 21 - -
Cca03g00104 245 PANTHER PROTEIN MIZU-KUSSEI 1 6 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00104 Cca-Chr3 1465446 1466672 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00104 - - ccaj:109797882 441.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00104 03 1465446 1466672 Cca03g00104 03 1465446 1466672 ECH
Cca09g02098 09 45997878 45998582 Cca03g00104 03 1465446 1466672 PCT