Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02248 ATGCATAACCACCACACGCTCTTACTCAGACTCTCCACGCTACCCTCTCGCTCTCTTCACCCCACAACAAAGACAAAGCTCAACAACAAGAGAAGCAAACACACTCCCACTTCCTCCTTCAGAAGAACCAATTGGATTGTTCCCAAGGCAATGCATTGCACTTCTCGCTGTGGCGACAACTACGATGAAATCGACAACACCACCAACAACAACGGTGTCACTTTCCGCAACCCCAAGCTGAACGAGTCAACGTTCCTGGCTTCTCTCATGCCCAAGACGGAGATTGGCGCCGACCGTTTCCTCCATTCTCACCCACACTACGATGGACGCGGTGTTGTCATCGCTATCTTCGATTCTGGGGTGGACCCAGCTGCTGCTGGATTACAGGTTACCTCAGATGGGAAACCTAAAATTCTTGACATTCTTGATTGCACTGGGAGTGGGGATATTGATACCTCAAAGGTGGTGAAGGCTGATGCTGATGGTTGTATTTTGGGGGCTTCAGGGGCATCTTTGGTTATCAATACTTCATGGAAAAATCCCTCTGGTGATTGGCATGTGGGTTATAAATTGGTTTATGAGCTCTTTACAAAAAATTTGACTTCTCGTTTGAAGAAAGAAAGAAAGAGAAAGTGGGATGAGAAAAACCAGGAGGAAATTGCAAAGGCAGTAAAACAGCTTACTGATTTTGATAAGGAACACATCAAGGTGGAGGATGCTAAACTGAAAAAGGTTCGTGAAGATCTCCAGAATAGACTTGATCTTCTGAGGAAGCAATATGAGAGTTATGATGATAAAGGGCCTGCCATAGATGCTGTTGTCTGGTATGATGGAGAGGTTTGGAGGGTTGCTCTTGACACACAGAGTCTTGAGGATGATCCGGATTTTGGGAAGCTTGCTAACTTTGTACCCTTAACTAATTATAGGACTGAGAAGAAGTATGGTATCTTCAGCAAATTAGATGCTTGTACATATGTTGTGAATGTCTATAATGATGGAAATGTCTTAAGTATGGTAACAGATAGCTCCCCTCATGGCACCCATGTTGCTGGTATAGCTACTGCATTCCACCCAGAGGAACCTTTGTTGAATGGAGTTGCACCTGGAGCACAATTAATATCTTGTAAAATTGGGGACTCTCGCTTAGGTTCAATGGAAACTGGAACTGGGTTGACTCGGGCACTGATAGCTGCTGTGGAGCATAAATGTGATCTCATCAACATGAGTTATGGCGAGCCTACATCACTGCCAGACTATGGACGGTTCGTTGACCTCGTGAATGAAGCAGTAGGCAAGCATCGTCTGATATTTGTGAGCAGTGCTGGTAATAGTGGGCCAGCATTGAGCACTGTTGGTGCTCCTGGTGGTACATCTTCAAATATTATAGGTGTTGGAGCTTATGTTTCTCCTGCTATGGCAGCTGGTGCTCATTGTGTTGTTGAACCTCCTTCTGAGGGTCTTGAATACACTTGGTCTAGCCGTGGACCAACAGCTGATGGAGATCTAGGTGTCAGTGTAAGTGCTCCTGGTTGTGCTGTTGCTCCTGTTCCTACATGGACTCTTCAACGGCGTATGCTCATGAACGGGACATCAATGGCATCTCCATCAGCCTGTGGTGGAATTGCATTGCTCTTAAGTGCAATGAAGGCTGAGGGAATTCCTGTGAGTCCATATAATGTGAGGAAGGCCCTTGAGAATACGTGTATTCCCATAGGTGATTCACCTGAGGATAAATTATCCACTGGGCAAGGGCTTATGCAAGTTGACAAGTGTTATGAATATATACAGCAGTCTCAAAATATTCCAAGTGTTCGGTATCAAATAAACATCAAGAAATCTGGAAAAACAGATCCTTCGTCACGGGGCATCTACTTGAGGGAGGCTCATGCTTGCCGACAACCTACTGAGTGGATTGTGCAAGTTGATCCAAAATTTCATGAAGATGCCAACAAGCTTGAAGAACTGGCTGTTTTTGAGGAGTGCATCGAGTTACACTCTTCAGATAAGTCAGTTGTGAAAGCCCCTGAGTATCTACTGCTCACTCATAATGGCTGCACCTTTAACATATTTGTGGATCCTACCAATTTAAATGATGGTCTGCATTATTATGAGGTTTATGGTATTGACTGCAAAGCGCCATGGCGTGGTCCTCTTTTCAGAATTCCAATTACTATAACCAAGCCCATGGCTGTAACTAACAGACACCCTCAAGTTTCATTTTCAAAGATGTTATTCCAGCCAGGCCATGTAGAAAGGAAATATATAGAAGTGCCACATGGTGCATCTTGGGTTGAAGCAACCATGAATGCTTCAAGTTTTGATACAGCTCGAAGATTTTTTGTGCACACTGTTCAGATATGTCCATTGCAAAGACCTTTTACACGGAGGAATGTGATAACCTTTTCTTCCCCTACTGCCAAAAGCTTCACCTTTGGGGTAGTAGGTGGTCAGACATTGGAACTAGTCATAGCCCAGTTTTGGTCAAGTGGCATTGGTAGTCATGAGACAACCAGTGTGGAGCTTGAGGTTGTGTTTCATGGTATAAAAGTCAAGCAAGAGGAAATTTTACTTGATGGGAGTGAAGCACCGGTCAAAATTGATGTTGAAGCATTACTAGCATCTGAGAAACTTGCACCTGTAGCAATTCTAAATAAGATAAGGATTCCATATCGACCAATAGATGCCAAGATTAGTGCACTCTCAAGTGACCGTGACAAACTCCCCTCTGGAAAGCAGATACTAGCATTGATGTTAACATACAAGATCAAATTGGAAGATGGAGCTGAAATAAAACCTCAAATACCATTTCTAAATGACCGGATATATGATACTAAATTTGAGTCTCAATTTTATATCATTTCCGATTCAAATAAGCAAGTATATTCAACTGGAGATGCCTATCCAAACACTACAAAACTTCCCAAGGGAGAGTACAATCTACAGCTATATTTGAGGCATGACAACTTGCAGCTTTTGGAAAGGATGAAGCAGCTGGTGTTATTCATTGAGCGAAATTTAGAAGAAAAGGAGATCATTCGGTTATGCTTTTTCTCTCAACCAGATGATCCACTGATGGGAAATGGTTCCTTTAAGTCCTCAACTTTAGTTCCAGGTATAAAAGAAGGATTTTATCTTGGTCCTCCACCAAAAGACAAACTTCCTAAAAACTCTCTACAAGGATCTGTATTGGTGGGATCAATATCATATGGTAGATTATCATTTGCTGGTCAAGGGGATCATAAAAATCCAGAAAAGCATCCTGTGTCATATCGGCTTTCTTATATTCTTCCCCCAAACAAGATTGATGAGGACAAGGGGAAGAATTCTTCCTTATCTACCAAGAAGACAGTTTCTGAACGCCTAGAACAAGAGGTACGAGATGCAAAAATAAAAGTGCTTGGGAGTCTAAAACAAGAAAGGGATGAAGAGTGCCTGGAATGGAAGGAGTTATCTGCCTCGCTCAAATCAGAATATCCAAAGTACACTCCATTGCTTGCAAAGATTTTGGAAGGTTTAGTTTCTAGGAGTTGCATCAAAGACAAATTCAATCATGATGAGGAGGTAATTAATGCAGCAAATGAGGTTATTGAAAGTATTGATAGAGAAGAGTTAGTAAAATATTTTGCACTAAAAAATGATCCAGAAGATGAGGAAGCAGAGAAAATCAAGAAAAAGATGGAATCAACACGTGATCAGTTGGCAGAGGCACTTTACCAAAAGGGGCTTGCACTGGCAGAAATAGAGTCTTTAAAGGACGTGGATAAGTCCTTGGCTTTGGCTACATCAGACGGTGCAAAACAAGATGTGGAGAAAACTGATGAGCAATCCAAGGATGATGGTGGCGTTCATCCAGACTTGTTCGAAGAGAACTTCAATGAACTGAAGAAATGGGTTGATGTCAAGTGCACAAAATATGGAATCCTCTTGGTGACAAATGAGAGGCGTAATCAAAGGCTTGGGACAGCATTGAAG 3972 0.425 MHNHHTLLLRLSTLPSRSLHPTTKTKLNNKRSKHTPTSSFRRTNWIVPKAMHCTSRCGDNYDEIDNTTNNNGVTFRNPKLNESTFLASLMPKTEIGADRFLHSHPHYDGRGVVIAIFDSGVDPAAAGLQVTSDGKPKILDILDCTGSGDIDTSKVVKADADGCILGASGASLVINTSWKNPSGDWHVGYKLVYELFTKNLTSRLKKERKRKWDEKNQEEIAKAVKQLTDFDKEHIKVEDAKLKKVREDLQNRLDLLRKQYESYDDKGPAIDAVVWYDGEVWRVALDTQSLEDDPDFGKLANFVPLTNYRTEKKYGIFSKLDACTYVVNVYNDGNVLSMVTDSSPHGTHVAGIATAFHPEEPLLNGVAPGAQLISCKIGDSRLGSMETGTGLTRALIAAVEHKCDLINMSYGEPTSLPDYGRFVDLVNEAVGKHRLIFVSSAGNSGPALSTVGAPGGTSSNIIGVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVSVSAPGCAVAPVPTWTLQRRMLMNGTSMASPSACGGIALLLSAMKAEGIPVSPYNVRKALENTCIPIGDSPEDKLSTGQGLMQVDKCYEYIQQSQNIPSVRYQINIKKSGKTDPSSRGIYLREAHACRQPTEWIVQVDPKFHEDANKLEELAVFEECIELHSSDKSVVKAPEYLLLTHNGCTFNIFVDPTNLNDGLHYYEVYGIDCKAPWRGPLFRIPITITKPMAVTNRHPQVSFSKMLFQPGHVERKYIEVPHGASWVEATMNASSFDTARRFFVHTVQICPLQRPFTRRNVITFSSPTAKSFTFGVVGGQTLELVIAQFWSSGIGSHETTSVELEVVFHGIKVKQEEILLDGSEAPVKIDVEALLASEKLAPVAILNKIRIPYRPIDAKISALSSDRDKLPSGKQILALMLTYKIKLEDGAEIKPQIPFLNDRIYDTKFESQFYIISDSNKQVYSTGDAYPNTTKLPKGEYNLQLYLRHDNLQLLERMKQLVLFIERNLEEKEIIRLCFFSQPDDPLMGNGSFKSSTLVPGIKEGFYLGPPPKDKLPKNSLQGSVLVGSISYGRLSFAGQGDHKNPEKHPVSYRLSYILPPNKIDEDKGKNSSLSTKKTVSERLEQEVRDAKIKVLGSLKQERDEECLEWKELSASLKSEYPKYTPLLAKILEGLVSRSCIKDKFNHDEEVINAANEVIESIDREELVKYFALKNDPEDEEAEKIKKKMESTRDQLAEALYQKGLALAEIESLKDVDKSLALATSDGAKQDVEKTDEQSKDDGGVHPDLFEENFNELKKWVDVKCTKYGILLVTNERRNQRLGTALK 1324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02248 1324 Pfam Subtilase family 109 568 IPR000209 GO:0006508|GO:0008236
Cca02g02248 1324 Gene3D - 604 740 - -
Cca02g02248 1324 Gene3D Peptidase S8/S53 domain 273 603 IPR036852 GO:0004252|GO:0006508
Cca02g02248 1324 MobiDBLite consensus disorder prediction 9 23 - -
Cca02g02248 1324 MobiDBLite consensus disorder prediction 1264 1284 - -
Cca02g02248 1324 Gene3D - 153 224 - -
Cca02g02248 1324 ProSiteProfiles Serine proteases, subtilase domain profile. 94 592 - -
Cca02g02248 1324 CDD Peptidases_S8_Tripeptidyl_Aminopeptidase_II 89 571 IPR034051 GO:0006508|GO:0008240
Cca02g02248 1324 ProSitePatterns Serine proteases, subtilase family, histidine active site. 345 355 IPR022398 -
Cca02g02248 1324 PANTHER PEPTIDASE S8 61 1261 - -
Cca02g02248 1324 Pfam Tripeptidyl peptidase II 872 1056 IPR022229 -
Cca02g02248 1324 Coils Coil 239 266 - -
Cca02g02248 1324 ProSitePatterns Serine proteases, subtilase family, serine active site. 529 539 IPR023828 -
Cca02g02248 1324 MobiDBLite consensus disorder prediction 1 39 - -
Cca02g02248 1324 Gene3D - 1115 1324 - -
Cca02g02248 1324 PRINTS Subtilisin serine protease family (S8) signature 528 544 IPR015500 -
Cca02g02248 1324 PRINTS Subtilisin serine protease family (S8) signature 109 128 IPR015500 -
Cca02g02248 1324 PRINTS Subtilisin serine protease family (S8) signature 341 354 IPR015500 -
Cca02g02248 1324 PANTHER TRIPEPTIDYL PEPTIDASE II 61 1261 - -
Cca02g02248 1324 Coils Coil 1219 1239 - -
Cca02g02248 1324 MobiDBLite consensus disorder prediction 1266 1284 - -
Cca02g02248 1324 SUPERFAMILY Subtilisin-like 73 606 IPR036852 GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02248 Cca-Chr2 43010086 43029780 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02248 K01280 - gmx:100787184 2397.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02248 02 43010086 43029780 Cca02g02248 02 43010086 43029780 ECH
Cca08g00670 08 12430864 12452072 Cca02g02248 02 43010086 43029780 PCT